Z. japonica Nagirizaki
Zjn_sc00061.1.g01040.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G13930.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 516 47 516 0.0 91.3 77.3 85.1
Subject 471 1 470
Annot | Symbols: SHM4 | serine hydroxymethyltransferase 4 | chr4:8048013-8050021 REVERSE LENGTH=471
NR ref|XP_004979238.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 516 47 516 0.0 91.3 87 89.7
Subject 471 1 470
Annot PREDICTED: serine hydroxymethyltransferase 4 [Setaria italica]
IRGSP Os11t0455800-01_chr11_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 516 47 516 0.0 91.3 86.2 89
Subject 471 1 470
Annot
Sbicolor Sobic.005G113300.1.p|Chr05|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 516 47 516 0.0 91.3 85.7 89
Subject 471 1 470
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00061.1.g01040.1.sm.mkhc length: 516 aa.
IPR001085 Serine hydroxymethyltransferase
method AccNumber shortName E-value location
Molecular Function GO:0004372 glycine hydroxymethyltransferase activity    
Biological Process GO:0006544 glycine metabolic process    
Biological Process GO:0006563 L-serine metabolic process    
HAMAP MF_00051 SHMT 41.684 57-507
HMMPIR PIRSF000412 Serine/glycine 3e-239 23-512
HMMPanther PTHR11680 SERINE 0 15-516
HMMPfam PF00464 SHMT 1.9e-183 58-458
IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.40.640.10 no description 1.2e-95 87-357
IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.90.1150.10 no description 8.4e-60 358-508
IPR015424 Pyridoxal phosphate-dependent transferase
superfamily SSF53383 PLP-dependent 9.8e-175 39-511
IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site
Molecular Function GO:0004372 glycine hydroxymethyltransferase activity    
Biological Process GO:0006544 glycine metabolic process    
Biological Process GO:0006563 L-serine metabolic process    
Molecular Function GO:0030170 pyridoxal phosphate binding    
PatternScan PS00096 SHMT NA 282-298
no_ID  
HMMPanther PTHR11680:SF0 SUBFAMILY 0 15-516
Seg seg seg NA 25-37
304-314
Pseudomolecule
Chromosome Start End Strand
1034005893404804+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00061.1 maker exon 1058927 1059334 . - . ID=Zjn_sc00061.1.g01040.1.sm.mkhc:exon:4
Zjn_sc00061.1 maker exon 1060067 1060168 . - . ID=Zjn_sc00061.1.g01040.1.sm.mkhc:exon:3
Zjn_sc00061.1 maker exon 1060251 1060641 . - . ID=Zjn_sc00061.1.g01040.1.sm.mkhc:exon:2
Zjn_sc00061.1 maker exon 1062327 1063142 . - . ID=Zjn_sc00061.1.g01040.1.sm.mkhc:exon:1

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