Z. japonica Nagirizaki
Zjn_sc00059.1.g01750.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT4G15130.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
289 |
34 |
275 |
e-117 |
105.2 |
66.4 |
76.5 |
| Subject |
304 |
19 |
259 |
|
| Annot |
| Symbols: ATCCT2, CCT2 | phosphorylcholine cytidylyltransferase2 | chr4:8637793-8639388 FORWARD LENGTH=304 |
| NR |
ref|XP_004983524.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
289 |
1 |
288 |
e-147 |
103.8 |
88.9 |
92.7 |
| Subject |
300 |
1 |
300 |
|
| Annot |
PREDICTED: choline-phosphate cytidylyltransferase 2-like [Setaria italica] |
| IRGSP |
Os10t0578900-02_chr10_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
289 |
1 |
288 |
e-144 |
100 |
83.4 |
90.7 |
| Subject |
289 |
1 |
289 |
|
| Annot |
|
| Sbicolor |
Sobic.001G282900.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
289 |
1 |
288 |
e-148 |
102.4 |
87.5 |
92 |
| Subject |
296 |
1 |
296 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00059.1.g01750.1.sm.mkhc |
length: 289 aa. |
| IPR004821 |
Cytidyltransferase-like domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Biological Process |
GO:0009058 |
biosynthetic process |
|
|
| HMMPfam |
PF01467 |
CTP_transf_2 |
1.3e-23 |
39-167 |
| HMMTigr |
TIGR00125 |
cyt_tran_rel: |
5.4e-21 |
37-104 |
| IPR014729 |
Rossmann-like alpha/beta/alpha sandwich fold |
| Gene3D |
G3DSA:3.40.50.620 |
no description |
2.2e-40 |
37-172 |
| no_ID |
|
| HMMPanther |
PTHR10739 |
CYTIDYLYLTRANSFERASE |
1.7e-138 |
32-274 |
| HMMPanther |
PTHR10739:SF13 |
CHOLINE-PHOSPHATE |
1.7e-138 |
32-274 |
| Seg |
seg |
seg |
NA |
7-21 |
| superfamily |
SSF52374 |
Nucleotidylyl |
4.5e-29 |
35-170 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 8 | 6215340 | 6217755 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00059.1 |
maker |
exon |
1243167 |
1243606 |
. |
- |
. |
ID=Zjn_sc00059.1.g01750.1.sm.mkhc:exon:8 |
| Zjn_sc00059.1 |
maker |
exon |
1243682 |
1243792 |
. |
- |
. |
ID=Zjn_sc00059.1.g01750.1.sm.mkhc:exon:7 |
| Zjn_sc00059.1 |
maker |
exon |
1243929 |
1243997 |
. |
- |
. |
ID=Zjn_sc00059.1.g01750.1.sm.mkhc:exon:6 |
| Zjn_sc00059.1 |
maker |
exon |
1244140 |
1244295 |
. |
- |
. |
ID=Zjn_sc00059.1.g01750.1.sm.mkhc:exon:5 |
| Zjn_sc00059.1 |
maker |
exon |
1244380 |
1244422 |
. |
- |
. |
ID=Zjn_sc00059.1.g01750.1.sm.mkhc:exon:4 |
| Zjn_sc00059.1 |
maker |
exon |
1244519 |
1244614 |
. |
- |
. |
ID=Zjn_sc00059.1.g01750.1.sm.mkhc:exon:3 |
| Zjn_sc00059.1 |
maker |
exon |
1245109 |
1245222 |
. |
- |
. |
ID=Zjn_sc00059.1.g01750.1.sm.mkhc:exon:2 |
| Zjn_sc00059.1 |
maker |
exon |
1245351 |
1245582 |
. |
- |
. |
ID=Zjn_sc00059.1.g01750.1.sm.mkhc:exon:1 |