Z. japonica Nagirizaki
Zjn_sc00059.1.g01300.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G32640.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 685 1 677 e-148 90.9 49.1 61
Subject 623 10 623
Annot | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 | Basic helix-loop-helix (bHLH) DNA-binding family protein | chr1:11799042-11800913 REVERSE LENGTH=623
NR ref|XP_008658563.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 685 1 685 0.0 102.9 84.4 89.9
Subject 705 1 705
Annot PREDICTED: transcription factor MYC4 [Zea mays] gi|414867852|tpg|DAA46409.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
IRGSP Os10t0575000-01_chr10_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 685 1 681 0.0 102 78 84.7
Subject 699 1 696
Annot
Sbicolor Sobic.001G287600.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 685 1 685 0.0 103.5 83.5 87.9
Subject 709 1 709
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00059.1.g01300.1.sm.mk length: 685 aa.
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
method AccNumber shortName E-value location
Molecular Function GO:0046983 protein dimerization activity    
Gene3D G3DSA:4.10.280.10 no description 6.9e-17 508-575
HMMPfam PF00010 HLH 4.3e-10 508-553
HMMSmart SM00353 helix 5.6e-16 510-559
ProfileScan PS50888 BHLH 17.390 504-553
superfamily SSF47459 HLH, 3.4e-19 502-586
IPR025610 Transcription factor MYC/MYB N-terminal
HMMPfam PF14215 bHLH-MYC_N 3.9e-44 55-235
no_ID  
Coil coil coiled-coil NA 550-578
HMMPanther PTHR11514 MYC 1.9e-226 1-678
HMMPanther PTHR11514:SF8 EGL3 1.9e-226 1-678
Seg seg seg NA 136-150
296-303
306-337
376-394
405-416
471-503
Pseudomolecule
Chromosome Start End Strand
858845375886594+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00059.1 maker_non_over exon 912364 914421 . + . ID=Zjn_sc00059.1.g01300.1.sm.mk:exon:1

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