Z. japonica Nagirizaki
Zjn_sc00059.1.g00310.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G61600.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 187 67 187 2e-16 128.9 28.3 36.4
Subject 241 10 127
Annot | Symbols: ERF104 | ethylene response factor 104 | chr5:24766643-24767368 REVERSE LENGTH=241
NR ref|XP_002464924.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 187 63 187 1e-29 148.1 45.5 51.3
Subject 277 4 145
Annot hypothetical protein SORBIDRAFT_01g028930 [Sorghum bicolor] gi|241918778|gb|EER91922.1| hypothetical protein SORBIDRAFT_01g028930 [Sorghum bicolor]
IRGSP Os04t0547600-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 187 143 187 5e-17 175.4 19.3 20.9
Subject 328 134 178
Annot
Sbicolor Sobic.001G296300.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 187 63 187 2e-31 142.8 46 50.3
Subject 267 4 135
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00059.1.g00310.1.am.mk length: 187 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 5.5e-10 148-159
171-187
Gene3D G3DSA:3.30.730.10 no description 5.1e-18 147-187
HMMPfam PF00847 AP2 8.4e-11 147-187
HMMSmart SM00380 DNA-binding 1.3e-07 147-187
ProfileScan PS51032 AP2_ERF 17.938 147-187
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 4.7e-14 146-187
no_ID  
HMMPanther PTHR31677 FAMILY 4.7e-13 147-187
Seg seg seg NA 81-92
130-147
Pseudomolecule
Chromosome Start End Strand
851450115145712+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00059.1 maker_non_over exon 172838 172891 . + . ID=Zjn_sc00059.1.g00310.1.am.mk:exon:1
Zjn_sc00059.1 maker_non_over exon 173030 173539 . + . ID=Zjn_sc00059.1.g00310.1.am.mk:exon:2

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