Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00058.1.g03580.1.sm.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00058.1)

BLAST

TAIR10	AT1G08250.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	420	7	406	e-159	98.3	69	79.5
		Subject	413	1	402
		Annot	\| Symbols: ADT6 \| arogenate dehydratase 6 \| chr1:2588994-2590235 REVERSE LENGTH=413
NR	ref\|XP_002446397.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	420	1	415	0.0	102.9	87.4	92.9
		Subject	432	1	415
		Annot	hypothetical protein SORBIDRAFT_06g015310 [Sorghum bicolor] gi\|241937580\|gb\|EES10725.1\| hypothetical protein SORBIDRAFT_06g015310 [Sorghum bicolor]
IRGSP	Os04t0406600-01_chr04_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	420	1	412	0.0	103.8	85.2	90
		Subject	436	1	423
		Annot
Sbicolor	Sobic.006G066200.1.p\|Chr06\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	420	1	415	0.0	102.9	87.4	92.9
		Subject	432	1	415
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR001086	Prephenate dehydratase
Zjn_sc00058.1.g03580.1.sm.mk				length: 420 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0004664	prephenate dehydratase activity
Biological Process	GO:0009094	L-phenylalanine biosynthetic process
HMMPfam	PF00800	PDT	3.8e-59	121-299
ProfileScan	PS51171	PREPHENATE_DEHYDR_3	46.828	120-297
IPR018528	Prephenate dehydratase, conserved site
Molecular Function	GO:0004664	prephenate dehydratase activity
Biological Process	GO:0009094	L-phenylalanine biosynthetic process
PatternScan	PS00857	PREPHENATE_DEHYDR_1	NA	273-295
PatternScan	PS00858	PREPHENATE_DEHYDR_2	NA	338-345
no_ID
Gene3D	G3DSA:3.30.70.260	no description	2.4e-27	304-405
Gene3D	G3DSA:3.40.190.10	no description	2.4e-30	117-204 205-285
HMMPanther	PTHR21022	PREPHENATE	1.5e-155	89-420
HMMPanther	PTHR21022:SF0	SUBFAMILY	1.5e-155	89-420
Seg	seg	seg	NA	262-270 413-420
superfamily	SSF55021	ACT-like	8.6e-23	292-406

Pseudomolecule

Chromosome	Start	End	Strand
11	3947893	3949155	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00058.1	maker_non_over	exon	1736797	1738059	.	-	.	ID=Zjn_sc00058.1.g03580.1.sm.mk:exon:1