Z. japonica Nagirizaki
Zjn_sc00058.1.g03530.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G03650.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 767 93 765 0.0 105 70.8 78.1
Subject 805 47 802
Annot | Symbols: SBE2.2 | starch branching enzyme 2.2 | chr5:931924-937470 FORWARD LENGTH=805
NR ref|XP_004975543.2| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 767 1 767 0.0 109.4 92.6 96
Subject 839 1 838
Annot PREDICTED: 1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic-like isoform X1 [Setaria italica]
IRGSP Os06t0726400-02_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 767 120 762 0.0 104 48 60.1
Subject 798 25 733
Annot
Sbicolor Sobic.006G066800.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 767 1 763 0.0 119.8 89 92.7
Subject 919 93 912
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00058.1.g03530.1.sm.mkhc length: 767 aa.
IPR004193 Glycoside hydrolase, family 13, N-terminal
method AccNumber shortName E-value location
Molecular Function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds    
Biological Process GO:0005975 carbohydrate metabolic process    
HMMPfam PF02922 CBM_48 7.5e-18 203-284
IPR006047 Glycosyl hydrolase, family 13, catalytic domain
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0005975 carbohydrate metabolic process    
Molecular Function GO:0043169 cation binding    
HMMPfam PF00128 Alpha-amylase 2.6e-14 352-423
IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic domain
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0005975 carbohydrate metabolic process    
Molecular Function GO:0043169 cation binding    
HMMSmart SM00642 Alpha-amylase 7.2e-08 342-683
IPR013780 Glycosyl hydrolase, family 13, all-beta
Gene3D G3DSA:2.60.40.1180 no description 0.00045 715-762
IPR013781 Glycoside hydrolase, catalytic domain
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0005975 carbohydrate metabolic process    
Gene3D G3DSA:3.20.20.80 no description 1.5e-68 315-665
IPR013783 Immunoglobulin-like fold
Gene3D G3DSA:2.60.40.10 no description 3e-24 194-294
IPR014756 Immunoglobulin E-set
superfamily SSF81296 E 3.3e-21 196-309
IPR015902 Glycoside hydrolase, family 13
Molecular Function GO:0003824 catalytic activity    
HMMPanther PTHR10357 ALPHA-AMYLASE 0 110-762
IPR017853 Glycoside hydrolase, superfamily
superfamily SSF51445 (Trans)glycosidases 2.8e-83 327-689
no_ID  
HMMPanther PTHR10357:SF27 1,4-ALPHA-GLUCAN-BRANCHING 0 110-762
Seg seg seg NA 8-33
96-109
712-728
superfamily SSF51011 Glycosyl 3.3e-17 691-767
Pseudomolecule
Chromosome Start End Strand
1139814143991260-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00058.1 maker exon 1694692 1694833 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:1
Zjn_sc00058.1 maker exon 1695262 1695386 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:2
Zjn_sc00058.1 maker exon 1695730 1695989 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:3
Zjn_sc00058.1 maker exon 1696415 1696513 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:4
Zjn_sc00058.1 maker exon 1696602 1696644 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:5
Zjn_sc00058.1 maker exon 1696720 1696779 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:6
Zjn_sc00058.1 maker exon 1697171 1697251 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:7
Zjn_sc00058.1 maker exon 1697348 1697464 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:8
Zjn_sc00058.1 maker exon 1697778 1697861 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:9
Zjn_sc00058.1 maker exon 1698475 1698596 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:10
Zjn_sc00058.1 maker exon 1698751 1698870 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:11
Zjn_sc00058.1 maker exon 1699521 1699650 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:12
Zjn_sc00058.1 maker exon 1699741 1699851 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:13
Zjn_sc00058.1 maker exon 1700099 1700227 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:14
Zjn_sc00058.1 maker exon 1700713 1700816 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:15
Zjn_sc00058.1 maker exon 1701147 1701234 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:16
Zjn_sc00058.1 maker exon 1702242 1702389 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:17
Zjn_sc00058.1 maker exon 1702491 1702591 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:18
Zjn_sc00058.1 maker exon 1703212 1703289 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:19
Zjn_sc00058.1 maker exon 1703927 1704001 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:20
Zjn_sc00058.1 maker exon 1704098 1704538 . + . ID=Zjn_sc00058.1.g03530.1.sm.mkhc:exon:21

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