Z. japonica Nagirizaki
Zjn_sc00058.1.g01530.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT2G02010.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
487 |
1 |
484 |
0.0 |
101.2 |
79.3 |
87.3 |
| Subject |
493 |
1 |
488 |
|
| Annot |
| Symbols: GAD4 | glutamate decarboxylase 4 | chr2:474375-476495 REVERSE LENGTH=493 |
| NR |
ref|XP_004975753.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
487 |
1 |
487 |
0.0 |
100 |
91.6 |
96.5 |
| Subject |
487 |
1 |
487 |
|
| Annot |
PREDICTED: glutamate decarboxylase-like [Setaria italica] |
| IRGSP |
Os04t0447400-01_chr04_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
487 |
1 |
487 |
0.0 |
99.4 |
90.1 |
95.1 |
| Subject |
484 |
1 |
484 |
|
| Annot |
|
| Sbicolor |
Sobic.006G095700.1.p|Chr06|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
487 |
1 |
487 |
0.0 |
100.2 |
91.6 |
95.9 |
| Subject |
488 |
1 |
488 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00058.1.g01530.1.sm.mkhc |
length: 487 aa. |
| IPR002129 |
Pyridoxal phosphate-dependent decarboxylase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016831 |
carboxy-lyase activity |
|
|
| Biological Process |
GO:0019752 |
carboxylic acid metabolic process |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| HMMPfam |
PF00282 |
Pyridoxal_deC |
4.5e-104 |
34-382 |
| IPR010107 |
Glutamate decarboxylase |
| Molecular Function |
GO:0004351 |
glutamate decarboxylase activity |
|
|
| Biological Process |
GO:0006536 |
glutamate metabolic process |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| HMMPanther |
PTHR11999:SF1 |
GLUTAMATE |
0 |
16-486 |
| HMMTigr |
TIGR01788 |
Glu-decarb-GAD: |
4.9e-215 |
17-445 |
| IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| Gene3D |
G3DSA:3.40.640.10 |
no description |
5.7e-29 |
76-312 |
| IPR015424 |
Pyridoxal phosphate-dependent transferase |
| superfamily |
SSF53383 |
PLP-dependent |
1.8e-130 |
4-449 |
| no_ID |
|
| HMMPanther |
PTHR11999 |
GROUP |
0 |
16-486 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 11 | 4893688 | 4895634 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00058.1 |
maker |
exon |
790318 |
790645 |
. |
+ |
. |
ID=Zjn_sc00058.1.g01530.1.sm.mkhc:exon:1 |
| Zjn_sc00058.1 |
maker |
exon |
790770 |
791185 |
. |
+ |
. |
ID=Zjn_sc00058.1.g01530.1.sm.mkhc:exon:2 |
| Zjn_sc00058.1 |
maker |
exon |
791314 |
791567 |
. |
+ |
. |
ID=Zjn_sc00058.1.g01530.1.sm.mkhc:exon:3 |
| Zjn_sc00058.1 |
maker |
exon |
791657 |
791709 |
. |
+ |
. |
ID=Zjn_sc00058.1.g01530.1.sm.mkhc:exon:4 |
| Zjn_sc00058.1 |
maker |
exon |
791818 |
792264 |
. |
+ |
. |
ID=Zjn_sc00058.1.g01530.1.sm.mkhc:exon:5 |