Z. japonica Nagirizaki
Zjn_sc00058.1.g00770.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G37940.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 90 1 88 1e-34 253.3 71.1 88.9
Subject 228 1 88
Annot | Symbols: AGL21 | AGAMOUS-like 21 | chr4:17835695-17838621 REVERSE LENGTH=228
NR emb|CAD40988.2| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 90 1 88 4e-40 261.1 90 94.4
Subject 235 1 88
Annot OSJNBa0072F16.13 [Oryza sativa Japonica Group]
IRGSP Os02t0579600-00_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 90 1 88 4e-42 266.7 85.6 95.6
Subject 240 1 88
Annot
Sbicolor Sobic.006G107700.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 90 1 88 5e-43 228.9 90 93.3
Subject 206 1 88
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00058.1.g00770.1.sm.mkhc length: 90 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 2.2e-29 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 1.9e-27 10-59
HMMSmart SM00432 no description 3.1e-40 1-60
PatternScan PS00350 MADS_BOX_1 NA 3-57
ProfileScan PS50066 MADS_BOX_2 32.043 1-61
superfamily SSF55455 SRF-like 1.7e-31 2-90
no_ID  
HMMPanther PTHR11945 MADS 1e-48 1-83
HMMPanther PTHR11945:SF19 MADS 1e-48 1-83
Pseudomolecule
Chromosome Start End Strand
1151927035194837+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00058.1 maker exon 491115 491126 . - . ID=Zjn_sc00058.1.g00770.1.sm.mkhc:exon:3
Zjn_sc00058.1 maker exon 491319 491397 . - . ID=Zjn_sc00058.1.g00770.1.sm.mkhc:exon:2
Zjn_sc00058.1 maker exon 492929 493249 . - . ID=Zjn_sc00058.1.g00770.1.sm.mkhc:exon:1

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