Z. japonica Nagirizaki
Zjn_sc00057.1.g01860.1.am.mk
Sequence
-
BLAST
| TAIR10 |
AT3G02380.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
116 |
34 |
86 |
2e-12 |
299.1 |
29.3 |
36.2 |
| Subject |
347 |
268 |
319 |
|
| Annot |
| Symbols: COL2, ATCOL2 | CONSTANS-like 2 | chr3:487438-488624 REVERSE LENGTH=347 |
| NR |
gb|AER41567.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
116 |
10 |
115 |
2e-28 |
211.2 |
60.3 |
73.3 |
| Subject |
245 |
137 |
244 |
|
| Annot |
CCT+motif+family [Oryza australiensis] |
| IRGSP |
Os07t0261200-01_chr07_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
116 |
10 |
115 |
7e-29 |
221.6 |
55.2 |
68.1 |
| Subject |
257 |
149 |
256 |
|
| Annot |
|
| Sbicolor |
Sobic.006G004400.1.p|Chr06|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
116 |
9 |
94 |
3e-25 |
225.9 |
48.3 |
57.8 |
| Subject |
262 |
166 |
252 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00057.1.g01860.1.am.mk |
length: 116 aa. |
| IPR010402 |
CCT domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF06203 |
CCT |
5.1e-20 |
45-88 |
| ProfileScan |
PS51017 |
CCT |
15.150 |
45-87 |
| no_ID |
|
| HMMPanther |
PTHR31319 |
FAMILY |
1.4e-16 |
43-89 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 12 | 210730 | 211080 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00057.1 |
maker_non_over |
exon |
1699237 |
1699587 |
. |
- |
. |
ID=Zjn_sc00057.1.g01860.1.am.mk:exon:1 |