Z. japonica Nagirizaki
Zjn_sc00057.1.g01820.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
AT5G24930.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
205 |
131 |
178 |
8e-14 |
198 |
17.1 |
20 |
| Subject |
406 |
336 |
383 |
|
| Annot |
| Symbols: ATCOL4, COL4 | CONSTANS-like 4 | chr5:8589325-8590949 FORWARD LENGTH=406 |
| NR |
gb|AGO03831.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
205 |
1 |
182 |
6e-43 |
119.5 |
55.6 |
63.9 |
| Subject |
245 |
52 |
234 |
|
| Annot |
CCT-domain protein [Sorghum bicolor] |
| IRGSP |
Os07t0261200-01_chr07_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
205 |
7 |
204 |
4e-34 |
125.4 |
50.2 |
61.5 |
| Subject |
257 |
51 |
256 |
|
| Annot |
|
| Sbicolor |
Sobic.006G004400.1.p|Chr06|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
205 |
1 |
182 |
2e-30 |
127.8 |
45.9 |
56.1 |
| Subject |
262 |
52 |
251 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00057.1.g01820.1.sm.mk |
length: 205 aa. |
| IPR010402 |
CCT domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF06203 |
CCT |
1.5e-19 |
134-177 |
| ProfileScan |
PS51017 |
CCT |
15.249 |
134-176 |
| no_ID |
|
| HMMPanther |
PTHR31319 |
FAMILY |
8.1e-18 |
131-178 |
| Seg |
seg |
seg |
NA |
77-88 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 12 | 238696 | 241059 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00057.1 |
maker_non_over |
exon |
1669258 |
1669575 |
. |
- |
. |
ID=Zjn_sc00057.1.g01820.1.sm.mk:exon:2 |
| Zjn_sc00057.1 |
maker_non_over |
exon |
1671322 |
1671621 |
. |
- |
. |
ID=Zjn_sc00057.1.g01820.1.sm.mk:exon:1 |