Z. japonica Nagirizaki
Zjn_sc00057.1.g00650.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G78390.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 176 1 157 9e-23 373.3 39.2 59.7
Subject 657 491 655
Annot | Symbols: NCED9, ATNCED9 | nine-cis-epoxycarotenoid dioxygenase 9 | chr1:29490895-29492868 REVERSE LENGTH=657
NR emb|CAH65873.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 176 1 156 2e-32 114.2 55.7 63.1
Subject 201 30 198
Annot OSIGBa0103I21.6 [Oryza sativa Indica Group]
IRGSP Os03t0645900-00_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 176 1 156 1e-24 345.5 43.8 56.3
Subject 608 437 607
Annot
Sbicolor Sobic.001G155300.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 176 1 156 1e-23 347.1 44.3 58
Subject 611 440 610
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00057.1.g00650.1.sm.mk length: 176 aa.
IPR004294 Carotenoid oxygenase
method AccNumber shortName E-value location
HMMPanther PTHR10543 BETA-CAROTENE 1e-26 59-168
HMMPfam PF03055 RPE65 2.9e-22 59-149
no_ID  
HMMPanther PTHR10543:SF1 9-CIS-EPOXYCAROTENOID 1e-26 59-168
Pseudomolecule
Chromosome Start End Strand
1212411291241836+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00057.1 maker_non_over exon 668481 668505 . - . ID=Zjn_sc00057.1.g00650.1.sm.mk:exon:3
Zjn_sc00057.1 maker_non_over exon 668639 668970 . - . ID=Zjn_sc00057.1.g00650.1.sm.mk:exon:2
Zjn_sc00057.1 maker_non_over exon 669015 669188 . - . ID=Zjn_sc00057.1.g00650.1.sm.mk:exon:1

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