Z. japonica Nagirizaki
Zjn_sc00057.1.g00620.1.am.mkhc
Sequence
-
BLAST
| TAIR10 |
No_hits |
| NR |
ref|XP_004975037.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
114 |
1 |
114 |
2e-41 |
102.6 |
79.8 |
88.6 |
| Subject |
117 |
1 |
117 |
|
| Annot |
PREDICTED: succinate dehydrogenase subunit 3-1, mitochondrial-like [Setaria italica] |
| IRGSP |
Os02t0121800-01_chr02_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
114 |
1 |
114 |
7e-44 |
113.2 |
83.3 |
86.8 |
| Subject |
129 |
1 |
129 |
|
| Annot |
|
| Sbicolor |
Sobic.001G206700.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
114 |
1 |
114 |
5e-45 |
196.5 |
83.3 |
87.7 |
| Subject |
224 |
108 |
224 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00057.1.g00620.1.am.mkhc |
length: 114 aa. |
| IPR000701 |
Succinate dehydrogenase/Fumarate reductase, transmembrane subunit |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016627 |
oxidoreductase activity, acting on the CH-CH group of donors |
|
|
| HMMPfam |
PF01127 |
Sdh_cyt |
2.1e-06 |
66-104 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1300.10 |
no description |
2.2e-07 |
65-109 |
| HMMPanther |
PTHR10978 |
SUCCINATE |
2e-21 |
1-113 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 12 | 1274097 | 1277352 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00057.1 |
maker |
exon |
632965 |
633079 |
. |
+ |
. |
ID=Zjn_sc00057.1.g00620.1.am.mkhc:exon:1 |
| Zjn_sc00057.1 |
maker |
exon |
634473 |
634535 |
. |
+ |
. |
ID=Zjn_sc00057.1.g00620.1.am.mkhc:exon:2 |
| Zjn_sc00057.1 |
maker |
exon |
635686 |
636220 |
. |
+ |
. |
ID=Zjn_sc00057.1.g00620.1.am.mkhc:exon:3 |