Z. japonica Nagirizaki
Zjn_sc00057.1.g00380.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
AT2G29570.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
112 |
1 |
100 |
1e-19 |
235.7 |
47.3 |
56.3 |
| Subject |
264 |
1 |
106 |
|
| Annot |
| Symbols: PCNA2, ATPCNA2 | proliferating cell nuclear antigen 2 | chr2:12650139-12651598 REVERSE LENGTH=264 |
| NR |
gb|ACF81392.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
112 |
1 |
111 |
2e-18 |
121.4 |
57.1 |
59.8 |
| Subject |
136 |
1 |
118 |
|
| Annot |
unknown [Zea mays] gi|413924168|gb|AFW64100.1| proliferating cell nuclear antigen isoform 1 [Zea mays] gi|413924169|gb|AFW64101.1| proliferating cell nuclear antigen isoform 2 [Zea mays] |
| IRGSP |
Os02t0805200-01_chr02_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
112 |
1 |
100 |
4e-21 |
234.8 |
52.7 |
58 |
| Subject |
263 |
1 |
106 |
|
| Annot |
|
| Sbicolor |
Sobic.004G336600.1.p|Chr04|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
112 |
1 |
101 |
2e-21 |
234.8 |
52.7 |
58.9 |
| Subject |
263 |
1 |
107 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00057.1.g00380.1.sm.mk |
length: 112 aa. |
| IPR000730 |
Proliferating cell nuclear antigen, PCNA |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Biological Process |
GO:0006275 |
regulation of DNA replication |
|
|
| Molecular Function |
GO:0030337 |
DNA polymerase processivity factor activity |
|
|
| Cellular Component |
GO:0043626 |
PCNA complex |
|
|
| HMMPanther |
PTHR11352 |
PROLIFERATING |
7e-14 |
1-100 |
| IPR022648 |
Proliferating cell nuclear antigen, PCNA, N-terminal |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Biological Process |
GO:0006275 |
regulation of DNA replication |
|
|
| HMMPfam |
PF00705 |
PCNA_N |
4e-15 |
1-100 |
| no_ID |
|
| Gene3D |
G3DSA:3.70.10.10 |
no description |
1.4e-12 |
1-100 |
| HMMPanther |
PTHR11352:SF0 |
SUBFAMILY |
7e-14 |
1-100 |
| superfamily |
SSF55979 |
DNA |
3.1e-09 |
1-70 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 12 | 1495220 | 1496806 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00057.1 |
maker_non_over |
exon |
413511 |
413534 |
. |
- |
. |
ID=Zjn_sc00057.1.g00380.1.sm.mk:exon:3 |
| Zjn_sc00057.1 |
maker_non_over |
exon |
414770 |
414984 |
. |
- |
. |
ID=Zjn_sc00057.1.g00380.1.sm.mk:exon:2 |
| Zjn_sc00057.1 |
maker_non_over |
exon |
414998 |
415097 |
. |
- |
. |
ID=Zjn_sc00057.1.g00380.1.sm.mk:exon:1 |