Z. japonica Nagirizaki
Zjn_sc00056.1.g04220.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G44940.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 428 101 240 9e-39 68.9 21.3 24.1
Subject 295 94 258
Annot | Symbols: | Integrase-type DNA-binding superfamily protein | chr2:18537294-18538181 FORWARD LENGTH=295
NR gb|AIY27948.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 428 23 275 3e-61 64 42.8 46.7
Subject 274 29 274
Annot dehydration responsive element binding protein 4-2 [Desmostachya bipinnata]
IRGSP Os04t0549700-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 428 64 275 5e-55 66.4 34.8 40
Subject 284 67 284
Annot
Sbicolor Sobic.006G169900.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 428 26 275 6e-59 73.1 40 44.6
Subject 313 28 313
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00056.1.g04220.1.am.mk length: 428 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 1.3e-10 107-118
129-145
Gene3D G3DSA:3.30.730.10 no description 1.9e-31 106-164
HMMPfam PF00847 AP2 2e-16 105-155
HMMSmart SM00380 DNA-binding 5e-37 106-169
ProfileScan PS51032 AP2_ERF 24.118 106-163
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 6.3e-24 105-166
no_ID  
HMMPanther PTHR31985 FAMILY 4.9e-80 84-277
Seg seg seg NA 12-19
32-43
85-96
173-212
231-245
370-387
Pseudomolecule
Chromosome Start End Strand
1175834217585771+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00056.1 maker_non_over exon 1693762 1694580 . + . ID=Zjn_sc00056.1.g04220.1.am.mk:exon:1
Zjn_sc00056.1 maker_non_over exon 1695645 1696112 . + . ID=Zjn_sc00056.1.g04220.1.am.mk:exon:2

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