Z. japonica Nagirizaki
Zjn_sc00056.1.g04020.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G17500.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 311 13 277 8e-47 86.2 38.6 47.6
Subject 268 15 251
Annot | Symbols: ATERF-1, ERF-1 | ethylene responsive element binding factor 1 | chr4:9759405-9760211 FORWARD LENGTH=268
NR gb|ABQ52686.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 311 1 310 4e-94 93.9 72.3 78.1
Subject 292 1 291
Annot ethylene-responsive factor [Thinopyrum intermedium]
IRGSP Os04t0546800-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 311 2 311 3e-88 102.3 68.2 75.2
Subject 318 6 318
Annot
Sbicolor Sobic.006G167800.2.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 311 1 311 2e-91 94.2 71.7 76.8
Subject 293 1 293
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00056.1.g04020.1.am.mk length: 311 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 1.1e-10 159-170
182-198
Gene3D G3DSA:3.30.730.10 no description 4.4e-31 157-216
HMMPfam PF00847 AP2 1.3e-17 158-208
HMMSmart SM00380 DNA-binding 2.2e-38 158-222
ProfileScan PS51032 AP2_ERF 24.250 158-216
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 1.3e-25 157-219
no_ID  
HMMPanther PTHR31190 FAMILY 5.7e-25 139-231
HMMPanther PTHR31190:SF0 SUBFAMILY 5.7e-25 139-231
Seg seg seg NA 21-32
95-109
133-154
192-205
224-231
243-258
267-271
273-286
Pseudomolecule
Chromosome Start End Strand
1175136197514554-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00056.1 maker_non_over exon 1623960 1624895 . - . ID=Zjn_sc00056.1.g04020.1.am.mk:exon:1

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