Z. japonica Nagirizaki
Zjn_sc00056.1.g03900.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
AT2G44745.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
236 |
75 |
220 |
8e-45 |
92.4 |
38.6 |
44.9 |
| Subject |
218 |
62 |
206 |
|
| Annot |
| Symbols: | WRKY family transcription factor | chr2:18447482-18449004 REVERSE LENGTH=218 |
| NR |
ref|XP_004956420.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
236 |
1 |
236 |
2e-79 |
100 |
65.7 |
70.3 |
| Subject |
236 |
1 |
236 |
|
| Annot |
PREDICTED: probable WRKY transcription factor 12 [Setaria italica] |
| IRGSP |
Os04t0545000-01_chr04_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
236 |
1 |
236 |
2e-59 |
105.9 |
62.7 |
69.5 |
| Subject |
250 |
5 |
250 |
|
| Annot |
|
| Sbicolor |
Sobic.006G166300.2.p|Chr06|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
236 |
1 |
236 |
2e-69 |
106.8 |
69.9 |
75 |
| Subject |
252 |
5 |
252 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00056.1.g03900.1.sm.mk |
length: 236 aa. |
| IPR003657 |
DNA-binding WRKY |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| Molecular Function |
GO:0043565 |
sequence-specific DNA binding |
|
|
| Gene3D |
G3DSA:2.20.25.80 |
no description |
9.6e-33 |
143-216 |
| HMMPfam |
PF03106 |
WRKY |
7e-30 |
158-216 |
| HMMSmart |
SM00774 |
DNA |
1.3e-37 |
158-217 |
| ProfileScan |
PS50811 |
WRKY |
29.953 |
153-218 |
| superfamily |
SSF118290 |
WRKY |
3.6e-28 |
149-219 |
| no_ID |
|
| HMMPanther |
PTHR31221 |
FAMILY |
9e-38 |
114-215 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 11 | 7462249 | 7464193 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00056.1 |
maker_non_over |
exon |
1572590 |
1572764 |
. |
- |
. |
ID=Zjn_sc00056.1.g03900.1.sm.mk:exon:4 |
| Zjn_sc00056.1 |
maker_non_over |
exon |
1573531 |
1573704 |
. |
- |
. |
ID=Zjn_sc00056.1.g03900.1.sm.mk:exon:3 |
| Zjn_sc00056.1 |
maker_non_over |
exon |
1574136 |
1574175 |
. |
- |
. |
ID=Zjn_sc00056.1.g03900.1.sm.mk:exon:2 |
| Zjn_sc00056.1 |
maker_non_over |
exon |
1574213 |
1574534 |
. |
- |
. |
ID=Zjn_sc00056.1.g03900.1.sm.mk:exon:1 |