Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00056.1.g03730.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00056.1)

BLAST

TAIR10	AT5G53550.2		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	641	21	641	0.0	105.3	62.4	76.1
		Subject	675	3	639
		Annot	\| Symbols: YSL3 \| YELLOW STRIPE like 3 \| chr5:21756081-21758776 FORWARD LENGTH=675
NR	emb\|CAH67443.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	641	1	641	0.0	106.7	76.4	86.4
		Subject	684	1	651
		Annot	H0501D11.7 [Oryza sativa Indica Group]
IRGSP	Os04t0542200-01_chr04_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	641	3	641	0.0	111.5	76.1	86.3
		Subject	715	34	682
		Annot
Sbicolor	Sobic.006G164200.1.p\|Chr06\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	641	22	641	0.0	104.2	74.1	84.7
		Subject	668	1	635
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR004813	Oligopeptide transporter, OPT superfamily
Zjn_sc00056.1.g03730.1.sm.mkhc				length: 641 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0055085	transmembrane transport
HMMPfam	PF03169	OPT	1.7e-113	65-641
HMMTigr	TIGR00728	OPT_sfam:	1.3e-98	61-641
no_ID
HMMPanther	PTHR31645	FAMILY	1e-252	34-641
HMMPanther	PTHR31645:SF0	SUBFAMILY	1e-252	34-641
Seg	seg	seg	NA	2-13 36-53 466-477

Pseudomolecule

Chromosome	Start	End	Strand
11	7390680	7393379	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00056.1	maker	exon	1501021	1501841	.	-	.	ID=Zjn_sc00056.1.g03730.1.sm.mkhc:exon:7
Zjn_sc00056.1	maker	exon	1501928	1502042	.	-	.	ID=Zjn_sc00056.1.g03730.1.sm.mkhc:exon:6
Zjn_sc00056.1	maker	exon	1502127	1502316	.	-	.	ID=Zjn_sc00056.1.g03730.1.sm.mkhc:exon:5
Zjn_sc00056.1	maker	exon	1502404	1502534	.	-	.	ID=Zjn_sc00056.1.g03730.1.sm.mkhc:exon:4
Zjn_sc00056.1	maker	exon	1502820	1502870	.	-	.	ID=Zjn_sc00056.1.g03730.1.sm.mkhc:exon:3
Zjn_sc00056.1	maker	exon	1503020	1503189	.	-	.	ID=Zjn_sc00056.1.g03730.1.sm.mkhc:exon:2
Zjn_sc00056.1	maker	exon	1503276	1503720	.	-	.	ID=Zjn_sc00056.1.g03730.1.sm.mkhc:exon:1