Z. japonica Nagirizaki
Zjn_sc00056.1.g02530.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G30080.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 835 18 689 e-148 80.2 36.9 47.4
Subject 670 15 653
Annot | Symbols: ARF16 | auxin response factor 16 | chr4:14703369-14705564 REVERSE LENGTH=670
NR sp|Q01I35.2|ARFJ_ORYSI Length Start End E-value Length(%) Iden(%) Posi(%)
Query 835 1 682 0.0 83.7 51.9 59.3
Subject 699 1 675
Annot RecName: Full=Auxin response factor 10 gi|158563995|sp|Q7XKK6.3|ARFJ_ORYSJ RecName: Full=Auxin response factor 10 gi|218195228|gb|EEC77655.1| hypothetical protein OsI_16669 [Oryza sativa Indica Group]
IRGSP Os02t0628600-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 835 1 682 0.0 81.6 49.6 57.8
Subject 681 1 657
Annot
Sbicolor Sobic.004G221400.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 835 1 682 0.0 84.8 49.3 57.2
Subject 708 1 684
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00056.1.g02530.1.am.mk length: 835 aa.
IPR003340 B3 DNA binding domain
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMPfam PF02362 B3 1.7e-19 124-225
HMMSmart SM01019 B3 4e-20 124-226
ProfileScan PS50863 B3 12.901 124-226
IPR010525 Auxin response factor
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009725 response to hormone stimulus    
HMMPfam PF06507 Auxin_resp 6.2e-31 279-362
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 12.394 621-682
IPR015300 DNA-binding pseudobarrel domain
Gene3D G3DSA:2.40.330.10 no description 9.6e-33 118-227
superfamily SSF101936 DNA-binding 2.8e-28 104-230
no_ID  
HMMPanther PTHR31384 FAMILY 2.2e-166 9-460
Seg seg seg NA 100-117
257-269
595-608
785-798
Pseudomolecule
Chromosome Start End Strand
1168838656889373+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00056.1 maker_non_over exon 994206 994269 . + . ID=Zjn_sc00056.1.g02530.1.am.mk:exon:1
Zjn_sc00056.1 maker_non_over exon 994343 994591 . + . ID=Zjn_sc00056.1.g02530.1.am.mk:exon:2
Zjn_sc00056.1 maker_non_over exon 994734 995995 . + . ID=Zjn_sc00056.1.g02530.1.am.mk:exon:3
Zjn_sc00056.1 maker_non_over exon 996089 997054 . + . ID=Zjn_sc00056.1.g02530.1.am.mk:exon:4
Zjn_sc00056.1 maker_non_over exon 997180 997247 . + . ID=Zjn_sc00056.1.g02530.1.am.mk:exon:5
Zjn_sc00056.1 maker_non_over exon 998196 998252 . + . ID=Zjn_sc00056.1.g02530.1.am.mk:exon:6
Zjn_sc00056.1 maker_non_over exon 998329 998505 . + . ID=Zjn_sc00056.1.g02530.1.am.mk:exon:7
Zjn_sc00056.1 maker_non_over exon 998534 998617 . + . ID=Zjn_sc00056.1.g02530.1.am.mk:exon:8
Zjn_sc00056.1 maker_non_over exon 999116 999183 . + . ID=Zjn_sc00056.1.g02530.1.am.mk:exon:9
Zjn_sc00056.1 maker_non_over exon 999249 999534 . + . ID=Zjn_sc00056.1.g02530.1.am.mk:exon:10
Zjn_sc00056.1 maker_non_over exon 999636 999714 . + . ID=Zjn_sc00056.1.g02530.1.am.mk:exon:11

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