Z. japonica Nagirizaki
Zjn_sc00056.1.g02500.1.am.mk
Sequence
-
BLAST
| TAIR10 |
AT2G37210.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
384 |
176 |
360 |
1e-83 |
56 |
40.1 |
44 |
| Subject |
215 |
11 |
211 |
|
| Annot |
| Symbols: | lysine decarboxylase family protein | chr2:15624253-15626834 REVERSE LENGTH=215 |
| NR |
ref|XP_006653604.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
384 |
147 |
384 |
e-103 |
65.6 |
51.6 |
56.3 |
| Subject |
252 |
2 |
252 |
|
| Annot |
PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL6-like [Oryza brachyantha] |
| IRGSP |
Os04t0518800-01_chr04_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
384 |
151 |
384 |
e-104 |
65.1 |
51.3 |
55.2 |
| Subject |
250 |
5 |
250 |
|
| Annot |
|
| Sbicolor |
Sobic.006G149300.1.p|Chr06|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
384 |
167 |
384 |
e-100 |
67.4 |
48.4 |
52.9 |
| Subject |
259 |
24 |
259 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00056.1.g02500.1.am.mk |
length: 384 aa. |
| IPR005269 |
Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF03641 |
Lysine_decarbox |
2.9e-28 |
223-337 |
| HMMTigr |
TIGR00730 |
TIGR00730: |
2e-44 |
179-340 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.450 |
no description |
2e-68 |
175-339 |
| HMMPanther |
PTHR31223 |
FAMILY |
3e-92 |
147-370 |
| Seg |
seg |
seg |
NA |
213-226 |
| superfamily |
SSF102405 |
MoCo |
2.3e-52 |
174-341 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 11 | 6868449 | 6873348 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00056.1 |
maker_non_over |
exon |
978790 |
978913 |
. |
+ |
. |
ID=Zjn_sc00056.1.g02500.1.am.mk:exon:1 |
| Zjn_sc00056.1 |
maker_non_over |
exon |
979033 |
979123 |
. |
+ |
. |
ID=Zjn_sc00056.1.g02500.1.am.mk:exon:2 |
| Zjn_sc00056.1 |
maker_non_over |
exon |
979397 |
979451 |
. |
+ |
. |
ID=Zjn_sc00056.1.g02500.1.am.mk:exon:3 |
| Zjn_sc00056.1 |
maker_non_over |
exon |
979755 |
979838 |
. |
+ |
. |
ID=Zjn_sc00056.1.g02500.1.am.mk:exon:4 |
| Zjn_sc00056.1 |
maker_non_over |
exon |
980484 |
980747 |
. |
+ |
. |
ID=Zjn_sc00056.1.g02500.1.am.mk:exon:5 |
| Zjn_sc00056.1 |
maker_non_over |
exon |
981655 |
981756 |
. |
+ |
. |
ID=Zjn_sc00056.1.g02500.1.am.mk:exon:6 |
| Zjn_sc00056.1 |
maker_non_over |
exon |
982531 |
982630 |
. |
+ |
. |
ID=Zjn_sc00056.1.g02500.1.am.mk:exon:7 |
| Zjn_sc00056.1 |
maker_non_over |
exon |
983090 |
983139 |
. |
+ |
. |
ID=Zjn_sc00056.1.g02500.1.am.mk:exon:8 |
| Zjn_sc00056.1 |
maker_non_over |
exon |
983245 |
983388 |
. |
+ |
. |
ID=Zjn_sc00056.1.g02500.1.am.mk:exon:9 |
| Zjn_sc00056.1 |
maker_non_over |
exon |
983549 |
983689 |
. |
+ |
. |
ID=Zjn_sc00056.1.g02500.1.am.mk:exon:10 |