Z. japonica Nagirizaki
Zjn_sc00056.1.g01460.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G57660.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 562 245 562 2e-58 63.2 27 33.6
Subject 355 9 355
Annot | Symbols: ATCOL5, COL5 | CONSTANS-like 5 | chr5:23355573-23356729 FORWARD LENGTH=355
NR ref|XP_008663359.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 562 240 561 e-131 57.5 46.8 49.1
Subject 323 1 322
Annot PREDICTED: zinc finger protein CONSTANS-LIKE 3-like [Zea mays] gi|413918802|gb|AFW58734.1| hypothetical protein ZEAMMB73_093452 [Zea mays] gi|645167718|gb|AIB05475.1| C2C2-CO-like transcription factor, partial [Zea mays]
IRGSP Os04t0497700-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 562 240 562 e-115 59.3 44.7 48.4
Subject 333 1 333
Annot
Sbicolor Sobic.006G135100.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 562 240 562 e-129 58.5 47.7 50.2
Subject 329 1 329
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00056.1.g01460.1.am.mk length: 562 aa.
IPR000315 Zinc finger, B-box
method AccNumber shortName E-value location
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00643 zf-B_box 5e-05 258-294
HMMSmart SM00336 B-Box-type 9.5e-10 255-299
300-342
ProfileScan PS50119 ZF_BBOX 10.395 255-299
295-342
IPR010402 CCT domain
Molecular Function GO:0005515 protein binding    
HMMPfam PF06203 CCT 2.1e-19 479-522
ProfileScan PS51017 CCT 16.618 479-521
no_ID  
HMMPanther PTHR31319 FAMILY 5.8e-132 230-562
Seg seg seg NA 82-91
312-326
350-373
449-474
523-552
Pseudomolecule
Chromosome Start End Strand
1164366306438660+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00056.1 maker_non_over exon 546971 546997 . + . ID=Zjn_sc00056.1.g01460.1.am.mk:exon:1
Zjn_sc00056.1 maker_non_over exon 547224 547782 . + . ID=Zjn_sc00056.1.g01460.1.am.mk:exon:2
Zjn_sc00056.1 maker_non_over exon 547810 548570 . + . ID=Zjn_sc00056.1.g01460.1.am.mk:exon:3
Zjn_sc00056.1 maker_non_over exon 548660 549001 . + . ID=Zjn_sc00056.1.g01460.1.am.mk:exon:4

Top