Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00056.1.g00070.1.sm.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00056.1)

BLAST

TAIR10	AT5G56110.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	353	1	168	4e-89	90.7	41.9	45
		Subject	320	1	168
		Annot	\| Symbols: AtMYB103, ATMYB80, MYB103, MS188 \| myb domain protein 103 \| chr5:22719191-22720664 FORWARD LENGTH=320
NR	ref\|NP_001146260.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	353	1	353	e-162	100.8	85.3	89
		Subject	356	1	356
		Annot	uncharacterized protein LOC100279834 [Zea mays] gi\|194690318\|gb\|ACF79243.1\| unknown [Zea mays] gi\|194700686\|gb\|ACF84427.1\| unknown [Zea mays] gi\|194703182\|gb\|ACF85675.1\| unknown [Zea mays] gi\|194708322\|gb\|ACF88245.1\| unknown [Zea mays] gi\|219886441\|gb\|ACL53595.1\| unknown [Zea mays] gi\|413918621\|gb\|AFW58553.1\| putative MYB DNA-binding domain superfamily protein [Zea mays]
IRGSP	Os04t0461000-01_chr04_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	353	1	127	3e-53	97.7	25.2	30.3
		Subject	345	1	127
		Annot
Sbicolor	Sobic.006G115200.1.p\|Chr06\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	353	1	353	e-157	105.1	84.1	87.8
		Subject	371	1	371
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR001005	SANT/Myb domain
Zjn_sc00056.1.g00070.1.sm.mk				length: 353 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003682	chromatin binding
HMMPfam	PF00249	Myb_DNA-binding	6.7e-12	14-61 68-110
HMMSmart	SM00717	SANT	2.8e-14	13-63 66-114
IPR009057	Homeodomain-like
Molecular Function	GO:0003677	DNA binding
Gene3D	G3DSA:1.10.10.60	no description	1.6e-23	5-64 65-116
superfamily	SSF46689	Homeodomain-like	1.1e-27	14-113
IPR017930	Myb domain
ProfileScan	PS51294	HTH_MYB	20.197	9-65 66-116
no_ID
HMMPanther	PTHR10641	MYB-LIKE	6.9e-92	1-144
HMMPanther	PTHR10641:SF30	MYB	6.9e-92	1-144
Seg	seg	seg	NA	174-193 314-333

Pseudomolecule

Chromosome	Start	End	Strand
11	5924349	5925519	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00056.1	maker_non_over	exon	34690	35618	.	-	.	ID=Zjn_sc00056.1.g00070.1.sm.mk:exon:2
Zjn_sc00056.1	maker_non_over	exon	35728	35860	.	-	.	ID=Zjn_sc00056.1.g00070.1.sm.mk:exon:1