Z. japonica Nagirizaki
Zjn_sc00055.1.g01460.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G60910.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 220 4 218 5e-39 110 42.7 64.1
Subject 242 2 239
Annot | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:24502736-24506013 REVERSE LENGTH=242
NR ref|XP_004962945.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 220 1 220 3e-66 110.9 66.8 78.6
Subject 244 1 237
Annot PREDICTED: MADS-box transcription factor 20-like [Setaria italica]
IRGSP Os12t0501700-00_chr12_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 220 4 220 3e-53 105.9 54.1 71.4
Subject 233 2 231
Annot
Sbicolor Sobic.008G103500.1.p|Chr08|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 220 1 216 1e-51 101.4 58.2 66.8
Subject 223 1 210
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00055.1.g01460.1.sm.mk length: 220 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 6.8e-25 5-25
25-40
40-61
HMMPfam PF00319 SRF-TF 4.8e-21 12-60
HMMSmart SM00432 no description 3.3e-28 3-62
PatternScan PS00350 MADS_BOX_1 NA 5-59
ProfileScan PS50066 MADS_BOX_2 28.553 3-63
superfamily SSF55455 SRF-like 2.3e-28 4-97
IPR002487 Transcription factor, K-box
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF01486 K-box 4.6e-16 87-153
ProfileScan PS51297 K_BOX 11.459 90-180
no_ID  
Coil coil coiled-coil NA 127-148
HMMPanther PTHR11945 MADS 5.1e-50 4-152
HMMPanther PTHR11945:SF19 MADS 5.1e-50 4-152
Seg seg seg NA 2-12
37-49
Pseudomolecule
Chromosome Start End Strand
1546638444666705-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00055.1 maker_non_over exon 1848773 1848961 . - . ID=Zjn_sc00055.1.g01460.1.sm.mk:exon:6
Zjn_sc00055.1 maker_non_over exon 1849363 1849401 . - . ID=Zjn_sc00055.1.g01460.1.sm.mk:exon:5
Zjn_sc00055.1 maker_non_over exon 1849766 1849865 . - . ID=Zjn_sc00055.1.g01460.1.sm.mk:exon:4
Zjn_sc00055.1 maker_non_over exon 1850269 1850333 . - . ID=Zjn_sc00055.1.g01460.1.sm.mk:exon:3
Zjn_sc00055.1 maker_non_over exon 1850450 1850528 . - . ID=Zjn_sc00055.1.g01460.1.sm.mk:exon:2
Zjn_sc00055.1 maker_non_over exon 1851444 1851634 . - . ID=Zjn_sc00055.1.g01460.1.sm.mk:exon:1

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