Z. japonica Nagirizaki
Zjn_sc00053.1.g02840.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G17680.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 410 124 409 6e-36 76.6 26.1 38.3
Subject 314 45 314
Annot | Symbols: | SBP (S-ribonuclease binding protein) family protein | chr4:9842903-9844095 REVERSE LENGTH=314
NR gb|ACN37072.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 410 86 410 5e-92 79.5 58 64.4
Subject 326 1 326
Annot unknown [Zea mays] gi|414867801|tpg|DAA46358.1| TPA: putative RING zinc finger domain superfamily protein [Zea mays]
IRGSP Os10t0565500-01_chr10_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 410 125 410 3e-59 85.6 49.5 55.1
Subject 351 48 351
Annot
Sbicolor Sobic.001G293600.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 410 99 410 3e-91 84.9 57.8 63.7
Subject 348 26 348
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00053.1.g02840.1.sm.mkhc length: 410 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 10.203 356-398
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 6.2e-07 353-405
no_ID  
Coil coil coiled-coil NA 205-237
257-292
299-320
HMMPanther PTHR14493 UNCHARACTERIZED 8.9e-26 179-409
HMMPanther PTHR14493:SF21 PROTEIN 8.9e-26 179-409
HMMPfam PF13920 zf-C3HC4_3 2.5e-11 354-402
Seg seg seg NA 11-26
55-79
193-205
248-280
296-316
348-362
382-395
superfamily SSF57850 RING/U-box 5.8e-07 348-410
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00053.1 maker exon 1679699 1680250 . - . ID=Zjn_sc00053.1.g02840.1.sm.mkhc:exon:3
Zjn_sc00053.1 maker exon 1680325 1680593 . - . ID=Zjn_sc00053.1.g02840.1.sm.mkhc:exon:2
Zjn_sc00053.1 maker exon 1680708 1681116 . - . ID=Zjn_sc00053.1.g02840.1.sm.mkhc:exon:1

Top