Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00053.1.g01670.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00053.1)

BLAST

TAIR10	AT3G60510.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	261	149	260	4e-32	153.6	26.4	33.3
		Subject	401	257	401
		Annot	\| Symbols: \| ATP-dependent caseinolytic (Clp) protease/crotonase family protein \| chr3:22357141-22360003 REVERSE LENGTH=401
NR	ref\|XP_002464966.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	261	154	261	7e-48	155.6	37.2	39.1
		Subject	406	266	406
		Annot	hypothetical protein SORBIDRAFT_01g029600 [Sorghum bicolor] gi\|241918820\|gb\|EER91964.1\| hypothetical protein SORBIDRAFT_01g029600 [Sorghum bicolor]
IRGSP	Os10t0552900-01_chr10_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	261	154	261	4e-46	157.5	34.9	38.3
		Subject	411	271	411
		Annot
Sbicolor	Sobic.001G304000.1.p\|Chr01\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	261	154	261	8e-51	155.6	37.2	39.1
		Subject	406	266	406
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

no_ID
Zjn_sc00053.1.g01670.1.sm.mkhc				length: 261 aa.
method	AccNumber	shortName	E-value	location
Gene3D	G3DSA:3.90.226.10	no description	5.9e-16	41-115
HMMPanther	PTHR11941	ENOYL-COA	1.6e-27	174-257
HMMPanther	PTHR11941:SF9	LAMBDA-CRYSTALLIN	1.6e-27	174-257
HMMPfam	PF13766	ECH_C	1.1e-17	174-240
Seg	seg	seg	NA	5-11 12-32
superfamily	SSF52096	ClpP/crotonase	6e-16	38-224

Pseudomolecule

No data.

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00053.1	maker	exon	969639	971313	.	-	.	ID=Zjn_sc00053.1.g01670.1.sm.mkhc:exon:11
Zjn_sc00053.1	maker	exon	971382	971423	.	-	.	ID=Zjn_sc00053.1.g01670.1.sm.mkhc:exon:10
Zjn_sc00053.1	maker	exon	971701	971802	.	-	.	ID=Zjn_sc00053.1.g01670.1.sm.mkhc:exon:9
Zjn_sc00053.1	maker	exon	972470	972530	.	-	.	ID=Zjn_sc00053.1.g01670.1.sm.mkhc:exon:8
Zjn_sc00053.1	maker	exon	972780	972856	.	-	.	ID=Zjn_sc00053.1.g01670.1.sm.mkhc:exon:7
Zjn_sc00053.1	maker	exon	974293	974310	.	-	.	ID=Zjn_sc00053.1.g01670.1.sm.mkhc:exon:6
Zjn_sc00053.1	maker	exon	974661	974680	.	-	.	ID=Zjn_sc00053.1.g01670.1.sm.mkhc:exon:5
Zjn_sc00053.1	maker	exon	975115	975178	.	-	.	ID=Zjn_sc00053.1.g01670.1.sm.mkhc:exon:4
Zjn_sc00053.1	maker	exon	975252	975320	.	-	.	ID=Zjn_sc00053.1.g01670.1.sm.mkhc:exon:3
Zjn_sc00053.1	maker	exon	976050	976130	.	-	.	ID=Zjn_sc00053.1.g01670.1.sm.mkhc:exon:2
Zjn_sc00053.1	maker	exon	976254	976416	.	-	.	ID=Zjn_sc00053.1.g01670.1.sm.mkhc:exon:1