Z. japonica Nagirizaki
Zjn_sc00053.1.g01500.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G00460.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 689 236 656 e-138 68.7 35.4 45.6
Subject 473 44 455
Annot | Symbols: ATROPGEF3, ROPGEF3 | RHO guanyl-nucleotide exchange factor 3 | chr4:211146-213094 REVERSE LENGTH=473
NR ref|XP_004983740.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 689 212 656 0.0 70.1 56.3 59.9
Subject 483 20 460
Annot PREDICTED: rop guanine nucleotide exchange factor 3-like [Setaria italica]
IRGSP Os10t0550300-00_chr10_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 689 217 656 0.0 69.5 50.8 57.2
Subject 479 19 462
Annot
Sbicolor Sobic.001G305300.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 689 212 656 0.0 71 55.3 59.5
Subject 489 15 466
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00053.1.g01500.1.am.mk length: 689 aa.
IPR005512 PRONE domain
method AccNumber shortName E-value location
Molecular Function GO:0005089 Rho guanyl-nucleotide exchange factor activity    
HMMPfam PF03759 PRONE 4.9e-171 303-656
ProfileScan PS51334 PRONE 103.397 295-678
no_ID  
HMMPanther PTHR32372 FAMILY 8.3e-260 195-656
HMMPanther PTHR32372:SF7 SUBFAMILY 8.3e-260 195-656
Seg seg seg NA 137-147
196-215
437-458
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00053.1 maker_non_over exon 877731 877832 . - . ID=Zjn_sc00053.1.g01500.1.am.mk:exon:12
Zjn_sc00053.1 maker_non_over exon 878620 878682 . - . ID=Zjn_sc00053.1.g01500.1.am.mk:exon:11
Zjn_sc00053.1 maker_non_over exon 878829 879167 . - . ID=Zjn_sc00053.1.g01500.1.am.mk:exon:10
Zjn_sc00053.1 maker_non_over exon 879277 879585 . - . ID=Zjn_sc00053.1.g01500.1.am.mk:exon:9
Zjn_sc00053.1 maker_non_over exon 879671 879745 . - . ID=Zjn_sc00053.1.g01500.1.am.mk:exon:8
Zjn_sc00053.1 maker_non_over exon 879879 880033 . - . ID=Zjn_sc00053.1.g01500.1.am.mk:exon:7
Zjn_sc00053.1 maker_non_over exon 880123 880239 . - . ID=Zjn_sc00053.1.g01500.1.am.mk:exon:6
Zjn_sc00053.1 maker_non_over exon 880334 880686 . - . ID=Zjn_sc00053.1.g01500.1.am.mk:exon:5
Zjn_sc00053.1 maker_non_over exon 881178 881193 . - . ID=Zjn_sc00053.1.g01500.1.am.mk:exon:4
Zjn_sc00053.1 maker_non_over exon 881259 881344 . - . ID=Zjn_sc00053.1.g01500.1.am.mk:exon:3
Zjn_sc00053.1 maker_non_over exon 882707 883035 . - . ID=Zjn_sc00053.1.g01500.1.am.mk:exon:2
Zjn_sc00053.1 maker_non_over exon 883228 883353 . - . ID=Zjn_sc00053.1.g01500.1.am.mk:exon:1

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