Z. japonica Nagirizaki
Zjn_sc00052.1.g00810.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G45660.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 75 3 65 2e-15 285.3 49.3 66.7
Subject 214 19 86
Annot | Symbols: AGL20, SOC1, ATSOC1 | AGAMOUS-like 20 | chr2:18807799-18810193 REVERSE LENGTH=214
NR ref|XP_004510894.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 75 2 62 7e-13 294.7 49.3 64
Subject 221 18 83
Annot PREDICTED: MADS-box protein SOC1 [Cicer arietinum] gi|828329308|ref|XP_012574216.1| PREDICTED: MADS-box protein SOC1 [Cicer arietinum]
IRGSP Os03t0122600-02_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 75 3 70 1e-14 306.7 48 64
Subject 230 19 81
Annot
Sbicolor Sobic.006G189500.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 75 3 67 7e-14 313.3 46.7 64
Subject 235 19 84
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00052.1.g00810.1.sm.mk length: 75 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 5.8e-16 7-22
22-43
HMMPfam PF00319 SRF-TF 3.3e-18 3-43
HMMSmart SM00432 no description 2.9e-12 1-44
ProfileScan PS50066 MADS_BOX_2 20.717 1-45
superfamily SSF55455 SRF-like 4.7e-16 3-68
no_ID  
HMMPanther PTHR11945 MADS 4.2e-19 3-56
HMMPanther PTHR11945:SF19 MADS 4.2e-19 3-56
Pseudomolecule
Chromosome Start End Strand
933702273372900-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00052.1 maker_non_over exon 1249798 1249891 . - . ID=Zjn_sc00052.1.g00810.1.sm.mk:exon:3
Zjn_sc00052.1 maker_non_over exon 1252209 1252336 . - . ID=Zjn_sc00052.1.g00810.1.sm.mk:exon:2
Zjn_sc00052.1 maker_non_over exon 1252466 1252471 . - . ID=Zjn_sc00052.1.g00810.1.sm.mk:exon:1

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