Z. japonica Nagirizaki
Zjn_sc00051.1.g02660.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G08150.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 549 254 548 1e-89 72.5 32.4 38.4
Subject 398 129 397
Annot | Symbols: KNAT1, BP, BP1 | KNOTTED-like from Arabidopsis thaliana | chr4:5147969-5150610 REVERSE LENGTH=398
NR ref|XP_004955415.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 549 171 549 e-139 64.1 53.6 56.6
Subject 352 1 352
Annot PREDICTED: homeobox protein rough sheath 1-like [Setaria italica]
IRGSP Os07t0129700-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 549 171 549 e-123 64.7 47.7 52.6
Subject 355 1 355
Annot
Sbicolor Sobic.002G023900.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 549 171 549 e-129 64.8 50.5 53.7
Subject 356 1 356
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00051.1.g02660.1.am.mk length: 549 aa.
IPR001356 Homeobox domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMSmart SM00389 Homeodomain 3.8e-13 452-517
ProfileScan PS50071 HOMEOBOX_2 12.908 450-513
IPR005539 ELK
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03789 ELK 1.7e-09 430-451
ProfileScan PS51213 ELK 11.627 430-450
IPR005540 KNOX1
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03790 KNOX1 1.4e-20 258-300
IPR005541 KNOX2
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03791 KNOX2 6.9e-22 311-355
IPR008422 Homeobox KN domain
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF05920 Homeobox_KN 8.2e-15 470-509
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 7.1e-27 455-514
superfamily SSF46689 Homeodomain-like 2.6e-19 451-528
IPR017970 Homeobox, conserved site
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
PatternScan PS00027 HOMEOBOX_1 NA 488-511
no_ID  
HMMPanther PTHR11850 HOMEOBOX 5.9e-54 258-523
HMMPanther PTHR11850:SF15 HOMEOBOX 5.9e-54 258-523
Seg seg seg NA 61-68
105-124
179-190
208-222
232-242
383-393
427-446
452-461
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00051.1 maker_non_over exon 1721164 1721370 . - . ID=Zjn_sc00051.1.g02660.1.am.mk:exon:8
Zjn_sc00051.1 maker_non_over exon 1721580 1721833 . - . ID=Zjn_sc00051.1.g02660.1.am.mk:exon:7
Zjn_sc00051.1 maker_non_over exon 1724478 1724526 . - . ID=Zjn_sc00051.1.g02660.1.am.mk:exon:6
Zjn_sc00051.1 maker_non_over exon 1724850 1725032 . - . ID=Zjn_sc00051.1.g02660.1.am.mk:exon:5
Zjn_sc00051.1 maker_non_over exon 1725140 1725253 . - . ID=Zjn_sc00051.1.g02660.1.am.mk:exon:4
Zjn_sc00051.1 maker_non_over exon 1725376 1726055 . - . ID=Zjn_sc00051.1.g02660.1.am.mk:exon:3
Zjn_sc00051.1 maker_non_over exon 1729637 1729703 . - . ID=Zjn_sc00051.1.g02660.1.am.mk:exon:2
Zjn_sc00051.1 maker_non_over exon 1729994 1730089 . - . ID=Zjn_sc00051.1.g02660.1.am.mk:exon:1

Top