Z. japonica Nagirizaki
Zjn_sc00051.1.g01050.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G02610.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 573 317 572 e-109 48 32.5 38.6
Subject 275 26 273
Annot | Symbols: | Aldolase-type TIM barrel family protein | chr4:1147662-1149217 FORWARD LENGTH=275
NR ref|XP_002459431.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 573 195 573 e-140 55.8 49.7 51.7
Subject 320 1 320
Annot hypothetical protein SORBIDRAFT_02g004580 [Sorghum bicolor] gi|241922808|gb|EER95952.1| hypothetical protein SORBIDRAFT_02g004580 [Sorghum bicolor]
IRGSP Os07t0182100-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 573 227 573 e-129 57.4 45.2 48
Subject 329 32 329
Annot
Sbicolor Sobic.002G054700.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 573 195 573 e-143 55.8 49.7 51.7
Subject 320 1 320
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00051.1.g01050.1.am.mkhc length: 573 aa.
IPR002028 Tryptophan synthase, alpha chain
method AccNumber shortName E-value location
Molecular Function GO:0004834 tryptophan synthase activity    
Biological Process GO:0006568 tryptophan metabolic process    
HAMAP MF_00131 Trp_synth_alpha 35.570 314-571
HMMPfam PF00290 Trp_syntA 1.7e-91 316-571
HMMTigr TIGR00262 trpA: 2.3e-87 314-569
IPR011060 Ribulose-phosphate binding barrel
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
superfamily SSF51366 Ribulose-phoshate 3e-80 316-573
IPR013785 Aldolase-type TIM barrel
Molecular Function GO:0003824 catalytic activity    
Gene3D G3DSA:3.20.20.70 no description 2.8e-95 317-572
IPR018204 Tryptophan synthase, alpha chain, active site
Molecular Function GO:0004834 tryptophan synthase activity    
PatternScan PS00167 TRP_SYNTHASE_ALPHA NA 348-361
no_ID  
HMMPanther PTHR10314 SER/THR 9.2e-76 317-476
HMMPanther PTHR10314:SF4 TRYTOPHAN 9.2e-76 317-476
Seg seg seg NA 144-159
201-263
284-299
370-381
455-466
555-569
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00051.1 maker exon 758985 759133 . + . ID=Zjn_sc00051.1.g01050.1.am.mkhc:exon:1
Zjn_sc00051.1 maker exon 759216 759377 . + . ID=Zjn_sc00051.1.g01050.1.am.mkhc:exon:2
Zjn_sc00051.1 maker exon 760749 760861 . + . ID=Zjn_sc00051.1.g01050.1.am.mkhc:exon:3
Zjn_sc00051.1 maker exon 760953 761438 . + . ID=Zjn_sc00051.1.g01050.1.am.mkhc:exon:4
Zjn_sc00051.1 maker exon 761595 761632 . + . ID=Zjn_sc00051.1.g01050.1.am.mkhc:exon:5
Zjn_sc00051.1 maker exon 762048 762218 . + . ID=Zjn_sc00051.1.g01050.1.am.mkhc:exon:6
Zjn_sc00051.1 maker exon 762297 762471 . + . ID=Zjn_sc00051.1.g01050.1.am.mkhc:exon:7
Zjn_sc00051.1 maker exon 762701 762777 . + . ID=Zjn_sc00051.1.g01050.1.am.mkhc:exon:8
Zjn_sc00051.1 maker exon 763330 763407 . + . ID=Zjn_sc00051.1.g01050.1.am.mkhc:exon:9
Zjn_sc00051.1 maker exon 763917 763994 . + . ID=Zjn_sc00051.1.g01050.1.am.mkhc:exon:10
Zjn_sc00051.1 maker exon 764130 764189 . + . ID=Zjn_sc00051.1.g01050.1.am.mkhc:exon:11
Zjn_sc00051.1 maker exon 764296 765369 . + . ID=Zjn_sc00051.1.g01050.1.am.mkhc:exon:12

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