Z. japonica Nagirizaki
Zjn_sc00051.1.g00710.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G15560.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 880 306 877 0.0 81.5 48.2 55
Subject 717 56 716
Annot | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | Deoxyxylulose-5-phosphate synthase | chr4:8884218-8887254 FORWARD LENGTH=717
NR ref|NP_001059086.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 880 297 879 0.0 81 60.8 64.4
Subject 713 41 712
Annot Os07g0190000 [Oryza sativa Japonica Group] gi|75225072|sp|Q6YU51.1|DXS2_ORYSJ RecName: Full=Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; Short=1-deoxyxylulose-5-phosphate synthase; Short=DXP synthase; Short=DXPS; Flags: Precursor gi|34394179|dbj|BAC84616.1| putative 1-deoxyxylulose 5-phosphate synthase [Oryza sativa Japonica Group] gi|50509413|dbj|BAD31023.1| putative 1-deoxyxylulose 5-phosphate synthase [Oryza sativa Japonica Group] gi|113610622|dbj|BAF21000.1| Os07g0190000 [Oryza sativa Japonica Group] gi|215704796|dbj|BAG94824.1| unnamed protein product [Oryza sativa Japonica Group] gi|222636586|gb|EEE66718.1| hypothetical protein OsJ_23394 [Oryza sativa Japonica Group]
IRGSP Os07t0190000-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 880 297 879 0.0 81 60.8 64.4
Subject 713 41 712
Annot
Sbicolor Sobic.002G064500.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 880 298 880 0.0 83 60.2 64.1
Subject 730 49 730
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00051.1.g00710.1.am.mk length: 880 aa.
IPR005475 Transketolase-like, pyrimidine-binding domain
method AccNumber shortName E-value location
HMMPfam PF02779 Transket_pyr 3.5e-25 585-728
HMMSmart SM00861 Transketolase, 6.9e-47 585-733
IPR005476 Transketolase, C-terminal
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
HMMPfam PF02780 Transketolase_C 1.2e-25 761-862
IPR005477 Deoxyxylulose-5-phosphate synthase
Molecular Function GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity    
Biological Process GO:0016114 terpenoid biosynthetic process    
HMMPfam PF13292 DXP_synthase_N 2e-61 327-545
HMMTigr TIGR00204 dxs: 8.7e-156 329-870
IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
superfamily SSF52922 TK 4.4e-31 741-871
IPR015941 Transketolase-like, C-terminal
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
Gene3D G3DSA:3.40.50.920 no description 2.7e-26 759-870
IPR020826 Transketolase binding site
PatternScan PS00802 TRANSKETOLASE_2 NA 683-699
no_ID  
Gene3D G3DSA:3.40.50.970 no description 6.5e-50 524-577
578-747
HMMPanther PTHR11624 DEHYDROGENASE 5.3e-237 330-880
HMMPanther PTHR11624:SF20 1-DEOXYXYLULOSE-5-PHOSPHATE 5.3e-237 330-880
Seg seg seg NA 4-18
27-39
173-196
205-218
256-275
343-354
superfamily SSF52518 Thiamin 4.7e-60 324-647
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00051.1 maker_non_over exon 521779 521925 . - . ID=Zjn_sc00051.1.g00710.1.am.mk:exon:15
Zjn_sc00051.1 maker_non_over exon 522024 522239 . - . ID=Zjn_sc00051.1.g00710.1.am.mk:exon:14
Zjn_sc00051.1 maker_non_over exon 522264 522428 . - . ID=Zjn_sc00051.1.g00710.1.am.mk:exon:13
Zjn_sc00051.1 maker_non_over exon 522456 522566 . - . ID=Zjn_sc00051.1.g00710.1.am.mk:exon:12
Zjn_sc00051.1 maker_non_over exon 522591 522866 . - . ID=Zjn_sc00051.1.g00710.1.am.mk:exon:11
Zjn_sc00051.1 maker_non_over exon 522894 522998 . - . ID=Zjn_sc00051.1.g00710.1.am.mk:exon:10
Zjn_sc00051.1 maker_non_over exon 523029 523136 . - . ID=Zjn_sc00051.1.g00710.1.am.mk:exon:9
Zjn_sc00051.1 maker_non_over exon 523170 523289 . - . ID=Zjn_sc00051.1.g00710.1.am.mk:exon:8
Zjn_sc00051.1 maker_non_over exon 523314 523595 . - . ID=Zjn_sc00051.1.g00710.1.am.mk:exon:7
Zjn_sc00051.1 maker_non_over exon 523644 523680 . - . ID=Zjn_sc00051.1.g00710.1.am.mk:exon:6
Zjn_sc00051.1 maker_non_over exon 523711 523760 . - . ID=Zjn_sc00051.1.g00710.1.am.mk:exon:5
Zjn_sc00051.1 maker_non_over exon 523903 524067 . - . ID=Zjn_sc00051.1.g00710.1.am.mk:exon:4
Zjn_sc00051.1 maker_non_over exon 524132 524641 . - . ID=Zjn_sc00051.1.g00710.1.am.mk:exon:3
Zjn_sc00051.1 maker_non_over exon 524737 524870 . - . ID=Zjn_sc00051.1.g00710.1.am.mk:exon:2
Zjn_sc00051.1 maker_non_over exon 526353 526569 . - . ID=Zjn_sc00051.1.g00710.1.am.mk:exon:1

Top