Z. japonica Nagirizaki
Zjn_sc00051.1.g00560.1.am.mkhc
Sequence
-
BLAST
| TAIR10 |
AT1G74800.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
367 |
1 |
367 |
e-146 |
183.1 |
67 |
84.2 |
| Subject |
672 |
229 |
672 |
|
| Annot |
| Symbols: | Galactosyltransferase family protein | chr1:28102221-28104993 REVERSE LENGTH=672 |
| NR |
ref|XP_004955739.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
367 |
1 |
367 |
0.0 |
121.8 |
94.8 |
98.4 |
| Subject |
447 |
6 |
447 |
|
| Annot |
PREDICTED: probable beta-1,3-galactosyltransferase 18 [Setaria italica] |
| IRGSP |
Os07t0194800-02_chr07_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
367 |
1 |
367 |
0.0 |
178.5 |
92.9 |
98.1 |
| Subject |
655 |
214 |
655 |
|
| Annot |
|
| Sbicolor |
Sobic.002G068800.1.p|Chr02|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
367 |
1 |
367 |
0.0 |
181.2 |
94.6 |
97.5 |
| Subject |
665 |
224 |
665 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00051.1.g00560.1.am.mkhc |
length: 367 aa. |
| IPR001079 |
Galectin, carbohydrate recognition domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0030246 |
carbohydrate binding |
|
|
| HMMPfam |
PF00337 |
Gal-bind_lectin |
8.6e-16 |
1-110 |
| ProfileScan |
PS51304 |
GALECTIN |
9.621 |
1-112 |
| IPR002659 |
Glycosyl transferase, family 31 |
| Biological Process |
GO:0006486 |
protein glycosylation |
|
|
| Molecular Function |
GO:0008378 |
galactosyltransferase activity |
|
|
| Cellular Component |
GO:0016020 |
membrane |
|
|
| HMMPanther |
PTHR11214 |
BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASET[8-367] |
2.6e-184 |
|
| HMMPfam |
PF01762 |
Galactosyl_T |
1.8e-26 |
168-314 |
| IPR008985 |
Concanavalin A-like lectin/glucanases superfamily |
| superfamily |
SSF49899 |
Concanavalin |
8.3e-06 |
15-114 |
| IPR013320 |
Concanavalin A-like lectin/glucanase, subgroup |
| Gene3D |
G3DSA:2.60.120.200 |
no description |
1.1e-05 |
12-58 |
| no_ID |
|
| HMMPanther |
PTHR11214:SF11 |
BETA |
2.6e-184 |
8-367 |
| superfamily |
SSF53448 |
Nucleotide-diphospho-sugar |
2.4e-06 |
203-328 |
Pseudomolecule
No data.
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00051.1 |
maker |
exon |
390845 |
391031 |
. |
+ |
. |
ID=Zjn_sc00051.1.g00560.1.am.mkhc:exon:1 |
| Zjn_sc00051.1 |
maker |
exon |
391890 |
391966 |
. |
+ |
. |
ID=Zjn_sc00051.1.g00560.1.am.mkhc:exon:2 |
| Zjn_sc00051.1 |
maker |
exon |
392579 |
392797 |
. |
+ |
. |
ID=Zjn_sc00051.1.g00560.1.am.mkhc:exon:3 |
| Zjn_sc00051.1 |
maker |
exon |
392943 |
393071 |
. |
+ |
. |
ID=Zjn_sc00051.1.g00560.1.am.mkhc:exon:4 |
| Zjn_sc00051.1 |
maker |
exon |
393178 |
393351 |
. |
+ |
. |
ID=Zjn_sc00051.1.g00560.1.am.mkhc:exon:5 |
| Zjn_sc00051.1 |
maker |
exon |
393728 |
393835 |
. |
+ |
. |
ID=Zjn_sc00051.1.g00560.1.am.mkhc:exon:6 |
| Zjn_sc00051.1 |
maker |
exon |
393940 |
395020 |
. |
+ |
. |
ID=Zjn_sc00051.1.g00560.1.am.mkhc:exon:7 |