Z. japonica Nagirizaki
Zjn_sc00051.1.g00510.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G23240.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 323 182 321 1e-34 67.5 23.5 30
Subject 218 84 212
Annot | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218
NR ref|XP_002461637.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 323 1 321 9e-70 105.3 59.1 67.5
Subject 340 1 337
Annot hypothetical protein SORBIDRAFT_02g005810 [Sorghum bicolor] gi|241925014|gb|EER98158.1| hypothetical protein SORBIDRAFT_02g005810 [Sorghum bicolor]
IRGSP Os03t0860100-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 323 182 321 1e-34 69.7 24.5 29.4
Subject 225 82 209
Annot
Sbicolor Sobic.002G069100.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 323 1 321 9e-73 105.3 59.1 67.5
Subject 340 1 337
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00051.1.g00510.1.am.mk length: 323 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 3.3e-07 180-191
203-219
Gene3D G3DSA:3.30.730.10 no description 3.5e-26 182-238
HMMPfam PF00847 AP2 3.9e-15 182-230
HMMSmart SM00380 DNA-binding 1.2e-29 182-243
ProfileScan PS51032 AP2_ERF 20.890 179-237
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 1.8e-22 178-240
no_ID  
HMMPanther PTHR31190 FAMILY 4.6e-18 182-263
HMMPanther PTHR31190:SF0 SUBFAMILY 4.6e-18 182-263
Seg seg seg NA 68-77
118-138
169-177
215-224
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00051.1 maker_non_over exon 363755 364726 . - . ID=Zjn_sc00051.1.g00510.1.am.mk:exon:1

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