Z. japonica Nagirizaki
Zjn_sc00051.1.g00490.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G23240.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 308 167 303 8e-34 70.8 23.7 29.5
Subject 218 84 209
Annot | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218
NR ref|XP_002459509.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 308 1 306 2e-79 109.7 63.3 73.1
Subject 338 1 335
Annot hypothetical protein SORBIDRAFT_02g005840 [Sorghum bicolor] gi|241922886|gb|EER96030.1| hypothetical protein SORBIDRAFT_02g005840 [Sorghum bicolor]
IRGSP Os03t0860100-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 308 167 306 6e-34 73.1 25 31.2
Subject 225 82 209
Annot
Sbicolor Sobic.002G069400.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 308 1 306 2e-82 109.7 63.3 73.1
Subject 338 1 335
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00051.1.g00490.1.am.mk length: 308 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 6e-07 165-176
188-204
Gene3D G3DSA:3.30.730.10 no description 3.6e-26 167-223
HMMPfam PF00847 AP2 4.3e-15 167-214
HMMSmart SM00380 DNA-binding 2e-30 167-228
ProfileScan PS51032 AP2_ERF 21.074 164-222
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 2.6e-22 163-225
no_ID  
HMMPanther PTHR31677 FAMILY 3.8e-19 129-223
Seg seg seg NA 66-87
126-136
142-163
200-209
237-242
297-308
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00051.1 maker_non_over exon 355194 356120 . - . ID=Zjn_sc00051.1.g00490.1.am.mk:exon:1

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