Z. japonica Nagirizaki
Zjn_sc00051.1.g00480.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G23240.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 342 199 339 1e-33 63.7 21.3 27.2
Subject 218 84 213
Annot | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218
NR ref|XP_002459509.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 342 1 336 2e-71 98.8 54.4 64.9
Subject 338 1 333
Annot hypothetical protein SORBIDRAFT_02g005840 [Sorghum bicolor] gi|241922886|gb|EER96030.1| hypothetical protein SORBIDRAFT_02g005840 [Sorghum bicolor]
IRGSP Os03t0860100-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 342 199 341 3e-33 65.8 22.2 28.1
Subject 225 82 212
Annot
Sbicolor Sobic.002G069400.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 342 1 336 2e-74 98.8 54.4 64.9
Subject 338 1 333
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00051.1.g00480.1.sm.mk length: 342 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 3.6e-07 197-208
220-236
Gene3D G3DSA:3.30.730.10 no description 3e-26 199-255
HMMPfam PF00847 AP2 6.7e-15 199-246
HMMSmart SM00380 DNA-binding 8.9e-31 199-260
ProfileScan PS51032 AP2_ERF 21.022 196-254
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 2.1e-22 195-257
no_ID  
HMMPanther PTHR31677 FAMILY 2.3e-19 161-255
Seg seg seg NA 73-85
126-148
164-178
184-192
232-241
264-276
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00051.1 maker_non_over exon 350076 351085 . + . ID=Zjn_sc00051.1.g00480.1.sm.mk:exon:1
Zjn_sc00051.1 maker_non_over exon 353034 353052 . + . ID=Zjn_sc00051.1.g00480.1.sm.mk:exon:2

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