Z. japonica Nagirizaki
Zjn_sc00051.1.g00470.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G23240.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 318 177 313 1e-31 68.6 22.3 28.3
Subject 218 84 209
Annot | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218
NR ref|XP_002459509.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 318 1 316 3e-75 106.3 58.2 69.2
Subject 338 1 335
Annot hypothetical protein SORBIDRAFT_02g005840 [Sorghum bicolor] gi|241922886|gb|EER96030.1| hypothetical protein SORBIDRAFT_02g005840 [Sorghum bicolor]
IRGSP Os03t0860100-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 318 177 316 2e-33 70.8 24.2 29.2
Subject 225 82 209
Annot
Sbicolor Sobic.002G069400.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 318 1 316 4e-78 106.3 58.2 69.2
Subject 338 1 335
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00051.1.g00470.1.am.mk length: 318 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 4.8e-10 175-186
214-234
Gene3D G3DSA:3.30.730.10 no description 1.1e-26 177-233
HMMPfam PF00847 AP2 6e-15 177-224
HMMSmart SM00380 DNA-binding 1.2e-31 177-238
ProfileScan PS51032 AP2_ERF 21.180 174-232
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 1.3e-22 173-235
no_ID  
HMMPanther PTHR31677 FAMILY 1.6e-19 139-233
Seg seg seg NA 62-90
152-161
210-219
240-257
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00051.1 maker_non_over exon 339508 340464 . + . ID=Zjn_sc00051.1.g00470.1.am.mk:exon:1

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