Z. japonica Nagirizaki
Zjn_sc00051.1.g00410.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
No_hits |
| NR |
ref|NP_001130126.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
360 |
1 |
358 |
e-141 |
116.7 |
70.3 |
79.7 |
| Subject |
420 |
1 |
360 |
|
| Annot |
hypothetical protein [Zea mays] gi|194688354|gb|ACF78261.1| unknown [Zea mays] gi|414887290|tpg|DAA63304.1| TPA: hypothetical protein ZEAMMB73_405968 [Zea mays] gi|414887291|tpg|DAA63305.1| TPA: hypothetical protein ZEAMMB73_405968 [Zea mays] |
| IRGSP |
Os07t0242600-01_chr07_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
360 |
18 |
356 |
2e-32 |
110.3 |
30 |
44.7 |
| Subject |
397 |
17 |
336 |
|
| Annot |
|
| Sbicolor |
Sobic.008G045600.1.p|Chr08|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
360 |
71 |
305 |
7e-88 |
84.4 |
43.3 |
52.2 |
| Subject |
304 |
54 |
283 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00051.1.g00410.1.sm.mkhc |
length: 360 aa. |
| IPR001810 |
F-box domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMSmart |
SM00256 |
A |
3.8e-06 |
26-67 |
| ProfileScan |
PS50181 |
FBOX |
10.133 |
20-68 |
| superfamily |
SSF81383 |
F-box |
5.7e-10 |
13-73 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
5.7e-06 |
20-63 |
| HMMPfam |
PF12937 |
F-box-like |
6.8e-06 |
23-65 |
| Seg |
seg |
seg |
NA |
42-58 |
Pseudomolecule
No data.
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00051.1 |
maker |
exon |
264575 |
265601 |
. |
+ |
. |
ID=Zjn_sc00051.1.g00410.1.sm.mkhc:exon:1 |
| Zjn_sc00051.1 |
maker |
exon |
266211 |
269327 |
. |
+ |
. |
ID=Zjn_sc00051.1.g00410.1.sm.mkhc:exon:2 |