Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00051.1.g00050.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00051.1)

BLAST

TAIR10	AT3G04870.2		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	557	32	539	0.0	100.2	75.2	84.2
		Subject	558	16	544
		Annot	\| Symbols: ZDS, PDE181, SPC1 \| zeta-carotene desaturase \| chr3:1342842-1346189 FORWARD LENGTH=558
NR	ref\|NP_001105609.2\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	557	1	557	0.0	102.7	92.6	95
		Subject	572	1	572
		Annot	zeta-carotene desaturase, chloroplastic/chromoplastic [Zea mays] gi\|414883938\|tpg\|DAA59952.1\| TPA: zeta-carotene desaturase, /chromoplastic Precursor [Zea mays]
IRGSP	Os07t0204900-01_chr07_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	557	39	557	0.0	103.8	89	91.6
		Subject	578	41	578
		Annot
Sbicolor	Sobic.002G072400.1.p\|Chr02\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	557	18	557	0.0	118.1	90.8	93.2
		Subject	658	101	658
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR002937	Amine oxidase
Zjn_sc00051.1.g00050.1.sm.mkhc				length: 557 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0016491	oxidoreductase activity
Biological Process	GO:0055114	oxidation-reduction process
HMMPfam	PF01593	Amino_oxidase	2.9e-73	80-525
IPR014103	Zeta-carotene desaturase
Biological Process	GO:0016117	carotenoid biosynthetic process
Molecular Function	GO:0016719	carotene 7,8-desaturase activity
Biological Process	GO:0055114	oxidation-reduction process
HMMTigr	TIGR02732	zeta_caro_desat:	8.3e-251	72-526
IPR016040	NAD(P)-binding domain
Gene3D	G3DSA:3.40.50.720	no description	2.9e-25	478-527
no_ID
FPrintScan	PR00419	ADXRDTASE	7.8e-06	72-94 95-108
HMMPanther	PTHR10742	AMINE	1.1e-264	16-545
HMMPanther	PTHR10742:SF6	CAROTENE	1.1e-264	16-545
Seg	seg	seg	NA	5-23
superfamily	SSF51905	FAD/NAD(P)-binding	1.2e-31	50-531

Pseudomolecule

No data.

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00051.1	maker	exon	38790	39291	.	-	.	ID=Zjn_sc00051.1.g00050.1.sm.mkhc:exon:14
Zjn_sc00051.1	maker	exon	39526	39690	.	-	.	ID=Zjn_sc00051.1.g00050.1.sm.mkhc:exon:13
Zjn_sc00051.1	maker	exon	39877	39949	.	-	.	ID=Zjn_sc00051.1.g00050.1.sm.mkhc:exon:12
Zjn_sc00051.1	maker	exon	40155	40270	.	-	.	ID=Zjn_sc00051.1.g00050.1.sm.mkhc:exon:11
Zjn_sc00051.1	maker	exon	40742	40866	.	-	.	ID=Zjn_sc00051.1.g00050.1.sm.mkhc:exon:10
Zjn_sc00051.1	maker	exon	40959	41001	.	-	.	ID=Zjn_sc00051.1.g00050.1.sm.mkhc:exon:9
Zjn_sc00051.1	maker	exon	41142	41217	.	-	.	ID=Zjn_sc00051.1.g00050.1.sm.mkhc:exon:8
Zjn_sc00051.1	maker	exon	41318	41562	.	-	.	ID=Zjn_sc00051.1.g00050.1.sm.mkhc:exon:7
Zjn_sc00051.1	maker	exon	41695	41799	.	-	.	ID=Zjn_sc00051.1.g00050.1.sm.mkhc:exon:6
Zjn_sc00051.1	maker	exon	42120	42193	.	-	.	ID=Zjn_sc00051.1.g00050.1.sm.mkhc:exon:5
Zjn_sc00051.1	maker	exon	42590	42662	.	-	.	ID=Zjn_sc00051.1.g00050.1.sm.mkhc:exon:4
Zjn_sc00051.1	maker	exon	42887	43021	.	-	.	ID=Zjn_sc00051.1.g00050.1.sm.mkhc:exon:3
Zjn_sc00051.1	maker	exon	43122	43246	.	-	.	ID=Zjn_sc00051.1.g00050.1.sm.mkhc:exon:2
Zjn_sc00051.1	maker	exon	43749	43908	.	-	.	ID=Zjn_sc00051.1.g00050.1.sm.mkhc:exon:1