Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00050.1.g03450.1.am.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00050.1)

BLAST

TAIR10	No_hits
NR	ref\|XP_004959376.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	461	16	459	e-106	95.2	49.7	65.9
		Subject	439	14	438
		Annot	PREDICTED: uncharacterized protein LOC101785327 [Setaria italica]
IRGSP	Os09t0324300-01_chr09_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	461	33	450	e-102	101.5	51.4	61.8
		Subject	468	45	458
		Annot
Sbicolor	Sobic.005G125200.1.p\|Chr05\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	461	87	443	3e-62	87.2	36.7	48.6
		Subject	402	13	385
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR001810	F-box domain
Zjn_sc00050.1.g03450.1.am.mk				length: 461 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
superfamily	SSF81383	F-box	2.9e-07	25-85
no_ID
Seg	seg	seg	NA	43-65 116-127 328-336 447-461

Pseudomolecule

Chromosome	Start	End	Strand
20	9175807	9177192	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00050.1	maker_non_over	exon	2101160	2102545	.	-	.	ID=Zjn_sc00050.1.g03450.1.am.mk:exon:1