Z. japonica Nagirizaki
Zjn_sc00050.1.g03220.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G13290.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 490 254 465 3e-81 61.6 28.8 32.9
Subject 302 54 248
Annot | Symbols: DOT5, WIP6 | C2H2-like zinc finger protein | chr1:4550366-4551527 REVERSE LENGTH=302
NR ref|XP_002460014.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 490 138 490 e-132 75.5 57.6 61.8
Subject 370 1 370
Annot hypothetical protein SORBIDRAFT_02g020840 [Sorghum bicolor] gi|241923391|gb|EER96535.1| hypothetical protein SORBIDRAFT_02g020840 [Sorghum bicolor]
IRGSP Os09t0307400-00_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 490 138 462 e-109 80.4 47.1 50.4
Subject 394 1 346
Annot
Sbicolor Sobic.002G164700.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 490 138 490 e-135 75.5 57.6 61.8
Subject 370 1 370
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00050.1.g03220.1.am.mk length: 490 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
HMMPfam PF00096 zf-C2H2 0.015 314-333
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 316-336
ProfileScan PS50157 ZINC_FINGER_C2H2_2 8.704 314-341
404-424
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 1.4e-05 314-333
390-424
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 58 314-336
367-399
404-424
no_ID  
HMMPanther PTHR11389 ZINC 7e-62 139-462
HMMPanther PTHR11389:SF379AZ2-RELATED T[139-462] 7e-62  
HMMPfam PF13894 zf-C2H2_4 0.007 404-426
Seg seg seg NA 96-109
186-212
220-240
466-483
superfamily SSF57667 C2H2 0.0002 386-424
307-341
Pseudomolecule
Chromosome Start End Strand
2090029899007724+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00050.1 maker_non_over exon 1928342 1928403 . + . ID=Zjn_sc00050.1.g03220.1.am.mk:exon:1
Zjn_sc00050.1 maker_non_over exon 1929163 1929279 . + . ID=Zjn_sc00050.1.g03220.1.am.mk:exon:2
Zjn_sc00050.1 maker_non_over exon 1929569 1929786 . + . ID=Zjn_sc00050.1.g03220.1.am.mk:exon:3
Zjn_sc00050.1 maker_non_over exon 1931858 1932450 . + . ID=Zjn_sc00050.1.g03220.1.am.mk:exon:4
Zjn_sc00050.1 maker_non_over exon 1932595 1933077 . + . ID=Zjn_sc00050.1.g03220.1.am.mk:exon:5

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