Z. japonica Nagirizaki
Zjn_sc00050.1.g02670.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G29080.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 262 1 261 7e-63 116.4 53.4 67.2
Subject 305 3 304
Annot | Symbols: PAP2, IAA27 | phytochrome-associated protein 2 | chr4:14323665-14325213 REVERSE LENGTH=305
NR ref|XP_002438435.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 262 1 260 e-103 95 75.6 82.4
Subject 249 1 248
Annot hypothetical protein SORBIDRAFT_10g019590 [Sorghum bicolor] gi|241916658|gb|EER89802.1| hypothetical protein SORBIDRAFT_10g019590 [Sorghum bicolor]
IRGSP Os06t0335500-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 262 1 262 9e-97 101.5 77.9 84.7
Subject 266 1 266
Annot
Sbicolor Sobic.010G146400.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 262 1 260 e-106 95 75.6 82.4
Subject 249 1 248
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00050.1.g02670.1.am.mkhc length: 262 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 6e-76 20-254
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 31.678 143-245
no_ID  
Coil coil coiled-coil NA 83-105
HMMPanther PTHR31734 FAMILY 3.7e-109 1-262
Seg seg seg NA 15-21
85-94
97-106
superfamily SSF54277 CAD 1.5e-22 130-243
Pseudomolecule
Chromosome Start End Strand
2086833888687091+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00050.1 maker exon 1608741 1609150 . + . ID=Zjn_sc00050.1.g02670.1.am.mkhc:exon:1
Zjn_sc00050.1 maker exon 1609791 1610032 . + . ID=Zjn_sc00050.1.g02670.1.am.mkhc:exon:2
Zjn_sc00050.1 maker exon 1610830 1610971 . + . ID=Zjn_sc00050.1.g02670.1.am.mkhc:exon:3
Zjn_sc00050.1 maker exon 1611517 1611578 . + . ID=Zjn_sc00050.1.g02670.1.am.mkhc:exon:4
Zjn_sc00050.1 maker exon 1611900 1612444 . + . ID=Zjn_sc00050.1.g02670.1.am.mkhc:exon:5

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