Z. japonica Nagirizaki
Zjn_sc00050.1.g01870.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G25470.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 317 17 150 1e-33 68.1 23.3 29
Subject 216 17 146
Annot | Symbols: CBF2, DREB1C, FTQ4, ATCBF2 | C-repeat/DRE binding factor 2 | chr4:13015436-13016086 REVERSE LENGTH=216
NR ref|XP_004957403.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 317 1 232 1e-82 73.2 53.6 61.5
Subject 232 1 231
Annot PREDICTED: dehydration-responsive element-binding protein 1A-like isoform X1 [Setaria italica]
IRGSP Os09t0522200-01_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 317 1 232 1e-76 75.1 49.8 58
Subject 238 1 237
Annot
Sbicolor Sobic.002G269300.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 317 1 232 8e-78 75.7 53 60.9
Subject 240 1 239
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00050.1.g01870.1.am.mk length: 317 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 6.2e-05 52-63
76-92
Gene3D G3DSA:3.30.730.10 no description 3e-27 51-112
HMMPfam PF00847 AP2 1.7e-15 50-102
HMMSmart SM00380 DNA-binding 4e-19 51-116
ProfileScan PS51032 AP2_ERF 20.943 51-110
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 4.8e-21 50-113
no_ID  
HMMPanther PTHR31839 FAMILY 1.7e-90 1-233
HMMPanther PTHR31839:SF0 SUBFAMILY 1.7e-90 1-233
Seg seg seg NA 10-24
86-105
149-170
262-280
Pseudomolecule
Chromosome Start End Strand
2082017258213644+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00050.1 maker_non_over exon 1127078 1127256 . + . ID=Zjn_sc00050.1.g01870.1.am.mk:exon:1
Zjn_sc00050.1 maker_non_over exon 1127610 1127734 . + . ID=Zjn_sc00050.1.g01870.1.am.mk:exon:2
Zjn_sc00050.1 maker_non_over exon 1128767 1128866 . + . ID=Zjn_sc00050.1.g01870.1.am.mk:exon:3
Zjn_sc00050.1 maker_non_over exon 1129013 1129222 . + . ID=Zjn_sc00050.1.g01870.1.am.mk:exon:4
Zjn_sc00050.1 maker_non_over exon 1129301 1129489 . + . ID=Zjn_sc00050.1.g01870.1.am.mk:exon:5
Zjn_sc00050.1 maker_non_over exon 1131044 1131116 . + . ID=Zjn_sc00050.1.g01870.1.am.mk:exon:6
Zjn_sc00050.1 maker_non_over exon 1131202 1131962 . + . ID=Zjn_sc00050.1.g01870.1.am.mk:exon:7
Zjn_sc00050.1 maker_non_over exon 1138733 1138997 . + . ID=Zjn_sc00050.1.g01870.1.am.mk:exon:8

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