Z. japonica Nagirizaki
Zjn_sc00050.1.g01060.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G24470.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 591 14 380 1e-47 112.9 25.2 33.7
Subject 667 137 477
Annot | Symbols: APRR5, PRR5 | pseudo-response regulator 5 | chr5:8356204-8358873 REVERSE LENGTH=667
NR ref|XP_004957453.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 591 1 591 0.0 106.6 79.4 86.6
Subject 630 1 630
Annot PREDICTED: two-component response regulator-like PRR95 isoform X1 [Setaria italica]
IRGSP Os09t0532400-02_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 591 1 591 0.0 105.4 70.9 80.2
Subject 623 1 623
Annot
Sbicolor Sobic.002G275100.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 591 24 591 0.0 106.6 74.6 83.1
Subject 630 32 630
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00050.1.g01060.1.sm.mkhc length: 591 aa.
IPR001789 Signal transduction response regulator, receiver domain
method AccNumber shortName E-value location
Molecular Function GO:0000156 phosphorelay response regulator activity    
Biological Process GO:0000160 phosphorelay signal transduction system    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF00072 Response_reg 1.2e-10 63-123
HMMSmart SM00448 cheY-homologous 0.00041 36-125
ProfileScan PS50110 RESPONSE_REGULATORY 15.771 62-129
IPR010402 CCT domain
Molecular Function GO:0005515 protein binding    
HMMPfam PF06203 CCT 7.9e-19 542-585
ProfileScan PS51017 CCT 15.100 542-584
IPR011006 CheY-like superfamily
superfamily SSF52172 CheY-like 1.4e-19 35-130
no_ID  
Gene3D G3DSA:3.40.50.2300 no description 4.3e-17 63-159
HMMPanther PTHR26402 RESPONSE 1.2e-20 63-180
HMMPanther PTHR26402:SF256TWO-COMPONENT RESPONSE 1.2e-20 63-180
Seg seg seg NA 11-23
175-186
378-390
Pseudomolecule
Chromosome Start End Strand
2077482797753165+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00050.1 maker exon 673632 674046 . + . ID=Zjn_sc00050.1.g01060.1.sm.mkhc:exon:1
Zjn_sc00050.1 maker exon 675195 675278 . + . ID=Zjn_sc00050.1.g01060.1.sm.mkhc:exon:2
Zjn_sc00050.1 maker exon 675363 675493 . + . ID=Zjn_sc00050.1.g01060.1.sm.mkhc:exon:3
Zjn_sc00050.1 maker exon 675623 675775 . + . ID=Zjn_sc00050.1.g01060.1.sm.mkhc:exon:4
Zjn_sc00050.1 maker exon 676445 676583 . + . ID=Zjn_sc00050.1.g01060.1.sm.mkhc:exon:5
Zjn_sc00050.1 maker exon 676678 676990 . + . ID=Zjn_sc00050.1.g01060.1.sm.mkhc:exon:6
Zjn_sc00050.1 maker exon 677329 678007 . + . ID=Zjn_sc00050.1.g01060.1.sm.mkhc:exon:7
Zjn_sc00050.1 maker exon 678100 678518 . + . ID=Zjn_sc00050.1.g01060.1.sm.mkhc:exon:8

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