Z. japonica Nagirizaki
Zjn_sc00050.1.g00880.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G21170.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 304 46 304 e-123 103.6 67.4 77.6
Subject 315 57 315
Annot | Symbols: TIM, PDTPI | triosephosphate isomerase | chr2:9071047-9073106 REVERSE LENGTH=315
NR ref|NP_001063777.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 304 1 304 e-159 100 90.5 96.1
Subject 304 1 304
Annot Os09g0535000 [Oryza sativa Japonica Group] gi|50725810|dbj|BAD33340.1| putative Triosephosphate isomerase, chloroplast precursor [Oryza sativa Japonica Group] gi|50726578|dbj|BAD34212.1| putative Triosephosphate isomerase, chloroplast precursor [Oryza sativa Japonica Group] gi|113632010|dbj|BAF25691.1| Os09g0535000 [Oryza sativa Japonica Group]
IRGSP Os09t0535000-02_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 304 1 304 e-162 100 90.5 96.1
Subject 304 1 304
Annot
Sbicolor Sobic.002G277100.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 304 11 304 e-151 100 86.8 91.4
Subject 304 12 304
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00050.1.g00880.1.sm.mkhc length: 304 aa.
IPR000652 Triosephosphate isomerase
method AccNumber shortName E-value location
Molecular Function GO:0004807 triose-phosphate isomerase activity    
Biological Process GO:0008152 metabolic process    
HMMPanther PTHR21139 TRIOSEPHOSPHATE 2.1e-148 50-300
HMMPfam PF00121 TIM 2.4e-91 56-294
HMMTigr TIGR00419 tim: 5.1e-83 56-287
ProfileScan PS51440 TIM_2 83.563 54-296
superfamily SSF51351 Triosephosphate 1e-95 50-297
IPR013785 Aldolase-type TIM barrel
Molecular Function GO:0003824 catalytic activity    
Gene3D G3DSA:3.20.20.70 no description 2.6e-105 54-298
IPR020861 Triosephosphate isomerase, active site
Molecular Function GO:0004807 triose-phosphate isomerase activity    
PatternScan PS00171 TIM_1 NA 212-222
no_ID  
Seg seg seg NA 2-21
Pseudomolecule
Chromosome Start End Strand
2076311097635022+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00050.1 maker exon 556462 556718 . + . ID=Zjn_sc00050.1.g00880.1.sm.mkhc:exon:1
Zjn_sc00050.1 maker exon 556804 556830 . + . ID=Zjn_sc00050.1.g00880.1.sm.mkhc:exon:2
Zjn_sc00050.1 maker exon 557448 557517 . + . ID=Zjn_sc00050.1.g00880.1.sm.mkhc:exon:3
Zjn_sc00050.1 maker exon 557776 557899 . + . ID=Zjn_sc00050.1.g00880.1.sm.mkhc:exon:4
Zjn_sc00050.1 maker exon 558057 558141 . + . ID=Zjn_sc00050.1.g00880.1.sm.mkhc:exon:5
Zjn_sc00050.1 maker exon 558256 558388 . + . ID=Zjn_sc00050.1.g00880.1.sm.mkhc:exon:6
Zjn_sc00050.1 maker exon 558507 558680 . + . ID=Zjn_sc00050.1.g00880.1.sm.mkhc:exon:7
Zjn_sc00050.1 maker exon 559090 559172 . + . ID=Zjn_sc00050.1.g00880.1.sm.mkhc:exon:8
Zjn_sc00050.1 maker exon 559268 560375 . + . ID=Zjn_sc00050.1.g00880.1.sm.mkhc:exon:9

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