Z. japonica Nagirizaki
Zjn_sc00050.1.g00570.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G38620.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 239 1 239 4e-80 118 68.2 79.5
Subject 282 1 282
Annot | Symbols: ATMYB4, MYB4 | myb domain protein 4 | chr4:18053866-18054876 FORWARD LENGTH=282
NR ref|XP_004957488.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 239 1 239 e-117 102.9 91.6 93.3
Subject 246 1 246
Annot PREDICTED: myb-related protein Hv1 [Setaria italica]
IRGSP Os09t0538400-01_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 239 1 239 e-112 105 90.8 93.7
Subject 251 1 251
Annot
Sbicolor Sobic.002G279100.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 239 1 239 e-113 110.5 90.4 92.9
Subject 264 1 264
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00050.1.g00570.1.sm.mkhc length: 239 aa.
IPR001005 SANT/Myb domain
method AccNumber shortName E-value location
Molecular Function GO:0003682 chromatin binding    
HMMPfam PF00249 Myb_DNA-binding 4.8e-16 14-61
67-111
HMMSmart SM00717 SANT 2.5e-17 13-63
66-114
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 8.7e-27 5-64
65-116
superfamily SSF46689 Homeodomain-like 4.4e-26 14-113
IPR017930 Myb domain
ProfileScan PS51294 HTH_MYB 16.580 62-116
9-61
no_ID  
HMMPanther PTHR10641 MYB-LIKE 2.7e-101 1-132
HMMPanther PTHR10641:SF203SUBFAMILY NOT 2.7e-101 1-132
Pseudomolecule
Chromosome Start End Strand
2074344087435236+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00050.1 maker exon 359761 360023 . + . ID=Zjn_sc00050.1.g00570.1.sm.mkhc:exon:1
Zjn_sc00050.1 maker exon 360133 360589 . + . ID=Zjn_sc00050.1.g00570.1.sm.mkhc:exon:2

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