Z. japonica Nagirizaki
Zjn_sc00050.1.g00200.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G11880.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 411 39 396 4e-18 119 24.3 38
Subject 489 87 454
Annot | Symbols: | Pyridoxal-dependent decarboxylase family protein | chr5:3827806-3829942 REVERSE LENGTH=489
NR ref|XP_008653000.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 411 1 411 0.0 118.5 84.9 91.7
Subject 487 78 487
Annot PREDICTED: ornithine decarboxylase-like [Zea mays] gi|414886487|tpg|DAA62501.1| TPA: hypothetical protein ZEAMMB73_329907 [Zea mays]
IRGSP Os09t0543400-00_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 411 1 411 e-180 104.1 83 89.5
Subject 428 15 428
Annot
Sbicolor Sobic.002G282800.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 411 1 411 0.0 100.5 82.5 91.5
Subject 413 1 413
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00050.1.g00200.1.sm.mk length: 411 aa.
IPR000183 Ornithine/DAP/Arg decarboxylase
method AccNumber shortName E-value location
Molecular Function GO:0003824 catalytic activity    
FPrintScan PR01179 ODADCRBXLASE 7.8e-32 80-98
100-112
203-216
283-302
385-398
IPR002433 Ornithine decarboxylase
Biological Process GO:0006596 polyamine biosynthetic process    
FPrintScan PR01182 ORNDCRBXLASE 2e-60 52-76
78-105
122-146
152-174
318-331
352-362
372-385
IPR009006 Alanine racemase/group IV decarboxylase, C-terminal
Molecular Function GO:0003824 catalytic activity    
Gene3D G3DSA:2.40.37.10 no description 8.2e-47 278-402
superfamily SSF50621 Alanine 1.5e-42 260-406
IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal
Molecular Function GO:0003824 catalytic activity    
HMMPfam PF00278 Orn_DAP_Arg_deC 4e-30 297-402
IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal
Molecular Function GO:0003824 catalytic activity    
HMMPfam PF02784 Orn_Arg_deC_N 1.5e-66 61-293
IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site
PatternScan PS00878 ODR_DC_2_1 NA 80-98
IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site
PatternScan PS00879 ODR_DC_2_2 NA 238-255
no_ID  
Gene3D G3DSA:3.20.20.10 no description 1.8e-75 64-277
HMMPanther PTHR11482 ARGININE/DIAMINOPIMELATE/ORNITHINE 2.2e-254 35-410
HMMPanther PTHR11482:SF29 SUBFAMILY 2.2e-254 35-410
Seg seg seg NA 92-100
226-239
251-265
superfamily SSF51419 PLP-binding 4.5e-66 58-295
Pseudomolecule
Chromosome Start End Strand
2072144027215637+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00050.1 maker_non_over exon 139755 140990 . + . ID=Zjn_sc00050.1.g00200.1.sm.mk:exon:1

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