Z. japonica Nagirizaki
Zjn_sc00049.1.g04700.1.am.mk
Sequence
-
BLAST
| TAIR10 |
AT2G01420.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
610 |
86 |
610 |
e-153 |
100.3 |
51.6 |
62.6 |
| Subject |
612 |
1 |
612 |
|
| Annot |
| Symbols: PIN4, ATPIN4 | Auxin efflux carrier family protein | chr2:180478-183199 REVERSE LENGTH=612 |
| NR |
emb|CDX82059.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
610 |
86 |
610 |
0.0 |
86.2 |
56.2 |
65.2 |
| Subject |
526 |
1 |
526 |
|
| Annot |
BnaC02g22310D [Brassica napus] |
| IRGSP |
Os06t0232300-01_chr06_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
610 |
86 |
610 |
0.0 |
97 |
60.2 |
68.2 |
| Subject |
592 |
1 |
592 |
|
| Annot |
|
| Sbicolor |
Sobic.010G095100.1.p|Chr10|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
610 |
86 |
610 |
0.0 |
99.3 |
60.3 |
67.9 |
| Subject |
606 |
1 |
606 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00049.1.g04700.1.am.mk |
length: 610 aa. |
| IPR004776 |
Auxin efflux carrier |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| Biological Process |
GO:0055085 |
transmembrane transport |
|
|
| HMMPfam |
PF03547 |
Mem_trans |
1e-159 |
95-605 |
| IPR014024 |
Auxin efflux carrier, plant type |
| HMMTigr |
TIGR00946 |
2a69: |
9.9e-145 |
86-610 |
| no_ID |
|
| HMMPanther |
PTHR31752 |
FAMILY |
2.7e-246 |
87-610 |
| HMMPanther |
PTHR31752:SF0 |
SUBFAMILY |
2.7e-246 |
87-610 |
| Seg |
seg |
seg |
NA |
58-77 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 20 | 2046485 | 2048946 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00049.1 |
maker_non_over |
exon |
2046485 |
2046510 |
. |
+ |
. |
ID=Zjn_sc00049.1.g04700.1.am.mk:exon:1 |
| Zjn_sc00049.1 |
maker_non_over |
exon |
2046705 |
2046909 |
. |
+ |
. |
ID=Zjn_sc00049.1.g04700.1.am.mk:exon:2 |
| Zjn_sc00049.1 |
maker_non_over |
exon |
2046975 |
2047914 |
. |
+ |
. |
ID=Zjn_sc00049.1.g04700.1.am.mk:exon:3 |
| Zjn_sc00049.1 |
maker_non_over |
exon |
2047988 |
2048261 |
. |
+ |
. |
ID=Zjn_sc00049.1.g04700.1.am.mk:exon:4 |
| Zjn_sc00049.1 |
maker_non_over |
exon |
2048357 |
2048442 |
. |
+ |
. |
ID=Zjn_sc00049.1.g04700.1.am.mk:exon:5 |
| Zjn_sc00049.1 |
maker_non_over |
exon |
2048521 |
2048755 |
. |
+ |
. |
ID=Zjn_sc00049.1.g04700.1.am.mk:exon:6 |
| Zjn_sc00049.1 |
maker_non_over |
exon |
2048880 |
2048946 |
. |
+ |
. |
ID=Zjn_sc00049.1.g04700.1.am.mk:exon:7 |