Z. japonica Nagirizaki
Zjn_sc00049.1.g04220.1.am.mk ( /TE )
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G22130.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 725 355 670 7e-22 46.2 13.4 19.4
Subject 335 32 287
Annot | Symbols: AGL104 | AGAMOUS-like 104 | chr1:7812387-7814259 REVERSE LENGTH=335
NR ref|XP_002436734.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 725 493 725 6e-71 47.9 21.5 25.2
Subject 347 82 347
Annot hypothetical protein SORBIDRAFT_10g007810 [Sorghum bicolor] gi|241914957|gb|EER88101.1| hypothetical protein SORBIDRAFT_10g007810 [Sorghum bicolor]
IRGSP Os06t0223300-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 725 355 725 6e-61 49.7 22.9 29.9
Subject 360 32 360
Annot
Sbicolor Sobic.010G090200.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 725 355 725 2e-86 51.4 27.2 32.6
Subject 373 32 373
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00049.1.g04220.1.am.mk length: 725 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
HMMPfam PF00319 SRF-TF 2.2e-08 355-381
HMMSmart SM00432 no description 0.0071 296-383
ProfileScan PS50066 MADS_BOX_2 10.568 355-384
superfamily SSF55455 SRF-like 1.8e-06 355-383
no_ID  
Coil coil coiled-coil NA 499-520
HMMPanther PTHR11945 MADS 1.8e-16 355-563
HMMPanther PTHR11945:SF19 MADS 1.8e-16 355-563
Seg seg seg NA 71-83
134-144
188-193
296-303
383-397
503-514
526-538
584-589
Pseudomolecule
Chromosome Start End Strand
2018180651822135+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00049.1 maker_non_over exon 1818065 1818120 . + . ID=Zjn_sc00049.1.g04220.1.am.mk:exon:1
Zjn_sc00049.1 maker_non_over exon 1818317 1818419 . + . ID=Zjn_sc00049.1.g04220.1.am.mk:exon:2
Zjn_sc00049.1 maker_non_over exon 1818860 1819069 . + . ID=Zjn_sc00049.1.g04220.1.am.mk:exon:3
Zjn_sc00049.1 maker_non_over exon 1819164 1819250 . + . ID=Zjn_sc00049.1.g04220.1.am.mk:exon:4
Zjn_sc00049.1 maker_non_over exon 1819439 1819841 . + . ID=Zjn_sc00049.1.g04220.1.am.mk:exon:5
Zjn_sc00049.1 maker_non_over exon 1819871 1820073 . + . ID=Zjn_sc00049.1.g04220.1.am.mk:exon:6
Zjn_sc00049.1 maker_non_over exon 1820326 1820565 . + . ID=Zjn_sc00049.1.g04220.1.am.mk:exon:7
Zjn_sc00049.1 maker_non_over exon 1820762 1820936 . + . ID=Zjn_sc00049.1.g04220.1.am.mk:exon:8
Zjn_sc00049.1 maker_non_over exon 1821007 1821191 . + . ID=Zjn_sc00049.1.g04220.1.am.mk:exon:9
Zjn_sc00049.1 maker_non_over exon 1821376 1821435 . + . ID=Zjn_sc00049.1.g04220.1.am.mk:exon:10
Zjn_sc00049.1 maker_non_over exon 1821520 1821671 . + . ID=Zjn_sc00049.1.g04220.1.am.mk:exon:11
Zjn_sc00049.1 maker_non_over exon 1821832 1822135 . + . ID=Zjn_sc00049.1.g04220.1.am.mk:exon:12

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