Z. japonica Nagirizaki
Zjn_sc00049.1.g03430.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G21880.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 371 15 231 2e-65 85.2 34 43.1
Subject 316 12 229
Annot | Symbols: LYM1 | lysm domain GPI-anchored protein 1 precursor | chr1:7680689-7682048 FORWARD LENGTH=316
NR gb|AFW76680.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 371 23 230 7e-96 66.3 48 51.2
Subject 246 19 226
Annot hypothetical protein ZEAMMB73_461578 [Zea mays]
IRGSP Os06t0208800-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 371 28 225 3e-98 110.2 48 50.7
Subject 409 28 225
Annot
Sbicolor Sobic.010G079100.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 371 28 225 4e-97 109.7 47.4 50.1
Subject 407 25 222
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00049.1.g03430.1.am.mk length: 371 aa.
IPR018392 Peptidoglycan-binding lysin domain
method AccNumber shortName E-value location
Biological Process GO:0016998 cell wall macromolecule catabolic process    
HMMPfam PF01476 LysM 3.4e-06 116-161
181-223
HMMSmart SM00257 Lysin 1.7e-05 111-161
180-223
no_ID  
Gene3D G3DSA:3.10.350.10 no description 2.9e-08 110-161
180-223
ProfileScan PS51257 PROKAR_LIPOPROTEIN 5.000 1-22
Seg seg seg NA 6-14
243-273
293-311
superfamily SSF54106 LysM 0.00065 178-225
109-163
Pseudomolecule
Chromosome Start End Strand
2014123381416269+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00049.1 maker_non_over exon 1412338 1413013 . + . ID=Zjn_sc00049.1.g03430.1.am.mk:exon:1
Zjn_sc00049.1 maker_non_over exon 1415376 1415539 . + . ID=Zjn_sc00049.1.g03430.1.am.mk:exon:2
Zjn_sc00049.1 maker_non_over exon 1415795 1415889 . + . ID=Zjn_sc00049.1.g03430.1.am.mk:exon:3
Zjn_sc00049.1 maker_non_over exon 1416089 1416269 . + . ID=Zjn_sc00049.1.g03430.1.am.mk:exon:4

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