Z. japonica Nagirizaki
Zjn_sc00049.1.g03190.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G13960.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 400 83 218 5e-37 99.3 20.3 23.5
Subject 397 2 124
Annot | Symbols: AtGRF5, GRF5 | growth-regulating factor 5 | chr3:4608526-4610160 FORWARD LENGTH=397
NR ref|XP_004964939.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 400 83 371 2e-89 80 53.3 58.8
Subject 320 1 319
Annot PREDICTED: growth-regulating factor 2-like isoform X2 [Setaria italica]
IRGSP Os06t0204800-00_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 400 93 370 5e-73 75.3 45 51
Subject 301 3 292
Annot
Sbicolor Sobic.010G077200.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 400 83 370 3e-87 81.3 51.8 56.8
Subject 325 1 323
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00049.1.g03190.1.am.mk length: 400 aa.
IPR014977 WRC
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF08879 WRC 4e-22 175-219
IPR014978 Glutamine-Leucine-Glutamine, QLQ
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    
HMMPfam PF08880 QLQ 3.1e-16 101-135
HMMSmart SM00951 no description 2e-09 100-136
no_ID  
Coil coil coiled-coil NA 66-87
HMMPanther PTHR31602 FAMILY 4e-49 44-254
Seg seg seg NA 68-81
90-100
163-173
235-269
303-315
Pseudomolecule
Chromosome Start End Strand
2012912061292703+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00049.1 maker_non_over exon 1291206 1291668 . + . ID=Zjn_sc00049.1.g03190.1.am.mk:exon:1
Zjn_sc00049.1 maker_non_over exon 1291793 1292183 . + . ID=Zjn_sc00049.1.g03190.1.am.mk:exon:2
Zjn_sc00049.1 maker_non_over exon 1292220 1292476 . + . ID=Zjn_sc00049.1.g03190.1.am.mk:exon:3
Zjn_sc00049.1 maker_non_over exon 1292612 1292703 . + . ID=Zjn_sc00049.1.g03190.1.am.mk:exon:4

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