Z. japonica Nagirizaki
Zjn_sc00049.1.g02050.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
AT2G25180.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
241 |
7 |
219 |
2e-68 |
247.3 |
56.8 |
71 |
| Subject |
596 |
11 |
245 |
|
| Annot |
| Symbols: ARR12, RR12 | response regulator 12 | chr2:10724490-10726961 REVERSE LENGTH=596 |
| NR |
ref|XP_004964668.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
241 |
1 |
219 |
4e-98 |
276.3 |
81.3 |
86.3 |
| Subject |
666 |
8 |
268 |
|
| Annot |
PREDICTED: two-component response regulator ARR12-like [Setaria italica] |
| IRGSP |
Os06t0183100-02_chr06_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
241 |
1 |
219 |
5e-95 |
288.8 |
75.9 |
84.2 |
| Subject |
696 |
8 |
267 |
|
| Annot |
|
| Sbicolor |
Sobic.010G064700.1.p|Chr10|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
241 |
4 |
219 |
e-100 |
278.8 |
78.4 |
85.1 |
| Subject |
672 |
24 |
274 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00049.1.g02050.1.sm.mk |
length: 241 aa. |
| IPR001789 |
Signal transduction response regulator, receiver domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0000156 |
phosphorelay response regulator activity |
|
|
| Biological Process |
GO:0000160 |
phosphorelay signal transduction system |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF00072 |
Response_reg |
2e-22 |
15-123 |
| HMMSmart |
SM00448 |
cheY-homologous |
7.4e-30 |
13-125 |
| ProfileScan |
PS50110 |
RESPONSE_REGULATORY |
32.579 |
14-129 |
| IPR006447 |
Myb domain, plants |
| HMMTigr |
TIGR01557 |
myb_SHAQKYF: |
4.5e-11 |
191-218 |
| IPR009057 |
Homeodomain-like |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Gene3D |
G3DSA:1.10.10.60 |
no description |
8.7e-09 |
192-218 |
| IPR011006 |
CheY-like superfamily |
| superfamily |
SSF52172 |
CheY-like |
2.4e-35 |
10-137 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.2300 |
no description |
3.6e-41 |
170-171 |
| HMMPanther |
PTHR24423 |
TWO |
2e-60 |
7-136 |
| HMMPanther |
PTHR24423:SF35 |
SUBFAMILY |
2e-60 |
7-136 |
| Seg |
seg |
seg |
NA |
180-193 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 20 | 842278 | 845801 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00049.1 |
maker_non_over |
exon |
842278 |
842392 |
. |
+ |
. |
ID=Zjn_sc00049.1.g02050.1.sm.mk:exon:1 |
| Zjn_sc00049.1 |
maker_non_over |
exon |
842759 |
842911 |
. |
+ |
. |
ID=Zjn_sc00049.1.g02050.1.sm.mk:exon:2 |
| Zjn_sc00049.1 |
maker_non_over |
exon |
843037 |
843345 |
. |
+ |
. |
ID=Zjn_sc00049.1.g02050.1.sm.mk:exon:3 |
| Zjn_sc00049.1 |
maker_non_over |
exon |
843530 |
843606 |
. |
+ |
. |
ID=Zjn_sc00049.1.g02050.1.sm.mk:exon:4 |
| Zjn_sc00049.1 |
maker_non_over |
exon |
845730 |
845801 |
. |
+ |
. |
ID=Zjn_sc00049.1.g02050.1.sm.mk:exon:5 |