Z. japonica Nagirizaki
Zjn_sc00049.1.g01220.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G24260.3 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 207 1 203 3e-55 114.5 57.5 74.4
Subject 237 1 214
Annot | Symbols: SEP3 | K-box region and MADS-box transcription factor family protein | chr1:8593790-8595862 REVERSE LENGTH=237
NR gb|AHM92065.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 207 1 204 5e-89 110.1 84.1 91.8
Subject 228 1 224
Annot MADS-box protein 5 [Phyllostachys edulis]
IRGSP Os06t0162800-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 207 1 204 9e-92 108.7 82.1 91.3
Subject 225 1 222
Annot
Sbicolor Sobic.010G050500.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 207 1 207 3e-91 108.7 82.1 92.8
Subject 225 1 224
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00049.1.g01220.1.sm.mkhc length: 207 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 1.2e-31 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 9e-27 9-59
HMMSmart SM00432 no description 1.1e-39 1-60
PatternScan PS00350 MADS_BOX_1 NA 3-57
ProfileScan PS50066 MADS_BOX_2 32.927 1-61
superfamily SSF55455 SRF-like 1.7e-32 2-95
IPR002487 Transcription factor, K-box
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF01486 K-box 8e-23 86-163
ProfileScan PS51297 K_BOX 12.197 86-176
no_ID  
Coil coil coiled-coil NA 123-144
HMMPanther PTHR11945 MADS 6.1e-83 1-163
HMMPanther PTHR11945:SF19 MADS 6.1e-83 1-163
Pseudomolecule
Chromosome Start End Strand
20483633487354-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00049.1 maker exon 483633 484022 . - . ID=Zjn_sc00049.1.g01220.1.sm.mkhc:exon:7
Zjn_sc00049.1 maker exon 484350 484474 . - . ID=Zjn_sc00049.1.g01220.1.sm.mkhc:exon:6
Zjn_sc00049.1 maker exon 484704 484745 . - . ID=Zjn_sc00049.1.g01220.1.sm.mkhc:exon:5
Zjn_sc00049.1 maker exon 484825 484924 . - . ID=Zjn_sc00049.1.g01220.1.sm.mkhc:exon:4
Zjn_sc00049.1 maker exon 485042 485103 . - . ID=Zjn_sc00049.1.g01220.1.sm.mkhc:exon:3
Zjn_sc00049.1 maker exon 485612 485687 . - . ID=Zjn_sc00049.1.g01220.1.sm.mkhc:exon:2
Zjn_sc00049.1 maker exon 487170 487354 . - . ID=Zjn_sc00049.1.g01220.1.sm.mkhc:exon:1

Top